PEACHi
GeneSet TRANSCRIPTION_ACTIVATOR_ACTIVITY (GO_-_Molecular_Function.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -4.4 0.0108 80.0 24.0 11.05
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000110711 AIP o--a
ENSG00000100823 APEX1 NonAssociatedWithProgression
ENSG00000117713 ARID1A o--b
ENSG00000143437 ARNT o++b
ENSG00000115966 ATF2 NonAssociatedWithProgression
ENSG00000128272 ATF4 o--b
ENSG00000118217 ATF6 o--a
ENSG00000142867 BCL10 o+o
ENSG00000112983 BRD8 o-+
ENSG00000012822 CALCOCO1 --o
ENSG00000144712 CAND2 NonAssociatedWithProgression
ENSG00000198707 CEP290 -oo
ENSG00000121022 COPS5 NonAssociatedWithProgression
ENSG00000005339 CREBBP NonAssociatedWithProgression
ENSG00000154832 CXXC1 o--a
ENSG00000135144 DTX1 o--b
ENSG00000122882 ECD +-o
ENSG00000107223 EDF1 o--b
ENSG00000109381 ELF2 NonAssociatedWithProgression
ENSG00000100393 EP300 o++b
ENSG00000120616 EPC1 o--b
ENSG00000104884 ERCC2 ---
ENSG00000118689 FOXO3 NonAssociatedWithProgression
ENSG00000107164 FUBP3 o-+
ENSG00000154727 GABPA o--b
ENSG00000126603 GLIS2 NonAssociatedWithProgression
ENSG00000125651 GTF2F1 o--a
ENSG00000172534 HCFC1 o--b
ENSG00000127124 HIVEP3 +-o
ENSG00000137309 HMGA1 o--b
ENSG00000025156 HSF2 o-o
ENSG00000109854 HTATIP2 o+-
ENSG00000129351 ILF3 -o-
ENSG00000152409 JMY o--a
ENSG00000171223 JUNB ---
ENSG00000067082 KLF6 +-o
ENSG00000118263 KLF7 oo-
ENSG00000161021 MAML1 o--b
ENSG00000125952 MAX NonAssociatedWithProgression
ENSG00000175221 MED16 ---
ENSG00000152944 MED21 -o-
ENSG00000112282 MED23 NonAssociatedWithProgression
ENSG00000008838 MED24 NonAssociatedWithProgression
ENSG00000105085 MED26 o--a
ENSG00000160563 MED27 o--a
ENSG00000164758 MED30 o+-
ENSG00000136146 MED4 NonAssociatedWithProgression
ENSG00000133997 MED6 NonAssociatedWithProgression
ENSG00000155868 MED7 NonAssociatedWithProgression
ENSG00000187098 MITF o--b
ENSG00000186260 MKL2 +o+
ENSG00000155229 MMS19 o--b
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000188786 MTF1 o+-
ENSG00000104177 MYEF2 NonAssociatedWithProgression
ENSG00000156650 MYST4 NonAssociatedWithProgression
ENSG00000198646 NCOA6 o--b
ENSG00000131196 NFATC1 o--b
ENSG00000050344 NFE2L3 NonAssociatedWithProgression
ENSG00000077150 NFKB2 NonAssociatedWithProgression
ENSG00000104825 NFKBIB ---
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000181163 NPM1 o--b
ENSG00000177463 NR2C2 NonAssociatedWithProgression
ENSG00000180530 NRIP1 o++a
ENSG00000166228 PCBD1 o++a
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000160783 PMF1 o-o
ENSG00000110777 POU2AF1 oo+
ENSG00000155846 PPARGC1B NonAssociatedWithProgression
ENSG00000102103 PQBP1 ---
ENSG00000101161 PRPF6 o-o
ENSG00000165916 PSMC3 o-o
ENSG00000239306 RBM14 o--a
ENSG00000133111 RFXAP NonAssociatedWithProgression
ENSG00000013561 RNF14 NonAssociatedWithProgression
ENSG00000124782 RREB1 NonAssociatedWithProgression
ENSG00000048649 RSF1 +-o
ENSG00000159216 RUNX1 o--b
ENSG00000124813 RUNX2 +oo
ENSG00000186350 RXRA ---
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000175387 SMAD2 NonAssociatedWithProgression
ENSG00000080503 SMARCA2 NonAssociatedWithProgression
ENSG00000127616 SMARCA4 o--b
ENSG00000173473 SMARCC1 o--a
ENSG00000139613 SMARCC2 --o
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000108604 SMARCD2 o--b
ENSG00000082014 SMARCD3 +oo
ENSG00000073584 SMARCE1 -oo
ENSG00000100603 SNW1 NonAssociatedWithProgression
ENSG00000185591 SP1 o--a
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000080603 SRCAP o--b
ENSG00000113387 SUB1 +-o
ENSG00000130699 TAF4 o++b
ENSG00000178913 TAF7 o--b
ENSG00000137413 TAF8 NonAssociatedWithProgression
ENSG00000085231 TAF9 o+o
ENSG00000028839 TBPL1 NonAssociatedWithProgression
ENSG00000113649 TCERG1 o--a
ENSG00000090447 TFAP4 o--b
ENSG00000198176 TFDP1 -o-
ENSG00000105329 TGFB1 o--a
ENSG00000122779 TRIM24 NonAssociatedWithProgression
ENSG00000100815 TRIP11 o++b
ENSG00000244687 UBE2V1 oo-
ENSG00000015153 YAF2 -oo
ENSG00000128245 YWHAH +-o
ENSG00000100811 YY1 o--b
ENSG00000148516 ZEB1 oo-
ENSG00000005889 ZFX o--b
ENSG00000122515 ZMIZ2 o--b
ENSG00000163848 ZNF148 NonAssociatedWithProgression
ENSG00000102935 ZNF423 o--b