PEACHi
GeneSet TGTTTGY_V$HNF3_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -3.5 0.04593 173.0 40.0 23.9
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000033050 ABCF2 o--a
ENSG00000100813 ACIN1 ---
ENSG00000143537 ADAM15 ---
ENSG00000105221 AKT2 o--a
ENSG00000117020 AKT3 o++b
ENSG00000182287 AP1S2 -+o
ENSG00000134982 APC NonAssociatedWithProgression
ENSG00000129675 ARHGEF6 ---
ENSG00000049618 ARID1B o+o
ENSG00000141480 ARRB2 ---
ENSG00000171456 ASXL1 o--b
ENSG00000174437 ATP2A2 -o-
ENSG00000017260 ATP2C1 oo-
ENSG00000121753 BAI2 o--a
ENSG00000095739 BAMBI NonAssociatedWithProgression
ENSG00000172530 BANP +-o
ENSG00000114439 BBX -+o
ENSG00000119866 BCL11A ---
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000113916 BCL6 +-o
ENSG00000186174 BCL9L o--b
ENSG00000196072 BLOC1S2 NonAssociatedWithProgression
ENSG00000104081 BMF +-o
ENSG00000012048 BRCA1 NonAssociatedWithProgression
ENSG00000169925 BRD3 ---
ENSG00000158019 BRE o--a
ENSG00000156983 BRPF1 o--b
ENSG00000133639 BTG1 NonAssociatedWithProgression
ENSG00000136261 BZW2 NonAssociatedWithProgression
ENSG00000107938 C10orf137 NonAssociatedWithProgression
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000156030 C14orf43 o--a
ENSG00000197183 C20orf112 o++a
ENSG00000115649 C2orf24 o--b
ENSG00000158435 C2orf29 o--b
ENSG00000106804 C5 NonAssociatedWithProgression
ENSG00000146350 C6orf170 o++b
ENSG00000112308 C6orf62 o-o
ENSG00000135185 C7orf23 NonAssociatedWithProgression
ENSG00000067955 CBFB o--a
ENSG00000183741 CBX6 o--b
ENSG00000171097 CCBL1 NonAssociatedWithProgression
ENSG00000164045 CDC25A o--b
ENSG00000124177 CHD6 NonAssociatedWithProgression
ENSG00000106069 CHN2 o++b
ENSG00000164442 CITED2 o++b
ENSG00000107864 CPEB3 o++b
ENSG00000214078 CPNE1 o--b
ENSG00000146592 CREB5 +oo
ENSG00000121671 CRY2 o--a
ENSG00000102974 CTCF o--b
ENSG00000144579 CTDSP1 o--a
ENSG00000204843 DCTN1 ---
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000110367 DDX6 o--b
ENSG00000067248 DHX29 o+o
ENSG00000132153 DHX30 o--b
ENSG00000080845 DLGAP4 NonAssociatedWithProgression
ENSG00000088387 DOCK9 o++a
ENSG00000091073 DTX2 ---
ENSG00000120129 DUSP1 o--a
ENSG00000143507 DUSP10 NonAssociatedWithProgression
ENSG00000139318 DUSP6 NonAssociatedWithProgression
ENSG00000184545 DUSP8 ---
ENSG00000101412 E2F1 o--b
ENSG00000169242 EFNA1 oo+
ENSG00000172889 EGFL7 ---
ENSG00000105656 ELL o--a
ENSG00000100393 EP300 o++b
ENSG00000177106 EPS8L2 --o
ENSG00000149564 ESAM +oo
ENSG00000072803 FBXW11 o++b
ENSG00000090920 FCGBP o++a
ENSG00000137478 FCHSD2 NonAssociatedWithProgression
ENSG00000125740 FOSB +-o
ENSG00000114861 FOXP1 oo-
ENSG00000033327 GAB2 +o+
ENSG00000099860 GADD45B o--b
ENSG00000116906 GNPAT NonAssociatedWithProgression
ENSG00000173230 GOLGB1 o--b
ENSG00000170412 GPRC5C NonAssociatedWithProgression
ENSG00000077235 GTF3C1 o--b
ENSG00000189060 H1F0 o--b
ENSG00000105968 H2AFV NonAssociatedWithProgression
ENSG00000113648 H2AFY NonAssociatedWithProgression
ENSG00000143321 HDGF ---
ENSG00000163666 HESX1 o++b
ENSG00000187837 HIST1H1C o--b
ENSG00000158373 HIST1H2BD NonAssociatedWithProgression
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000120093 HOXB3 oo+
ENSG00000112144 ICK o+o
ENSG00000137070 IL11RA NonAssociatedWithProgression
ENSG00000172349 IL16 NonAssociatedWithProgression
ENSG00000113520 IL4 NonAssociatedWithProgression
ENSG00000169047 IRS1 o--b
ENSG00000176842 IRX5 o-o
ENSG00000136156 ITM2B NonAssociatedWithProgression
ENSG00000125877 ITPA NonAssociatedWithProgression
ENSG00000143772 ITPKB o-o
ENSG00000096433 ITPR3 o-o
ENSG00000166086 JAM3 o-o
ENSG00000008083 JARID2 o-o
ENSG00000104369 JPH1 NonAssociatedWithProgression
ENSG00000171223 JUNB ---
ENSG00000132361 KIAA0664 ---
ENSG00000214655 KIAA0913 ---
ENSG00000183853 KIRREL o--a
ENSG00000118922 KLF12 o+o
ENSG00000109787 KLF3 +o+
ENSG00000102554 KLF5 o-+
ENSG00000118263 KLF7 oo-
ENSG00000198728 LDB1 o--b
ENSG00000161904 LEMD2 o--a
ENSG00000182909 LENG9 ---
ENSG00000118308 LRMP o--a
ENSG00000049323 LTBP1 -oo
ENSG00000007392 LUC7L o--b
ENSG00000034152 MAP2K3 ---
ENSG00000076984 MAP2K7 ---
ENSG00000102882 MAPK3 o--b
ENSG00000166987 MBD6 o--b
ENSG00000143995 MEIS1 o++b
ENSG00000134138 MEIS2 o++b
ENSG00000161013 MGAT4B ---
ENSG00000187098 MITF o--b
ENSG00000118058 MLL o--a
ENSG00000153944 MSI2 NonAssociatedWithProgression
ENSG00000119950 MXI1 +-o
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000166507 NDST2 o-o
ENSG00000166136 NDUFB8 o-o
ENSG00000050344 NFE2L3 NonAssociatedWithProgression
ENSG00000162599 NFIA NonAssociatedWithProgression
ENSG00000146232 NFKBIE o--b
ENSG00000125820 NKX2-2 o-+
ENSG00000165671 NSD1 NonAssociatedWithProgression
ENSG00000065320 NTN1 o++a
ENSG00000065154 OAT o-o
ENSG00000147162 OGT o-o
ENSG00000130703 OSBPL2 o++b
ENSG00000079462 PAFAH1B3 o--a
ENSG00000128050 PAICS NonAssociatedWithProgression
ENSG00000120727 PAIP2 NonAssociatedWithProgression
ENSG00000169564 PCBP1 NonAssociatedWithProgression
ENSG00000150593 PDCD4 oo-
ENSG00000120913 PDLIM2 ---
ENSG00000043143 PHF15 o--b
ENSG00000107959 PITRM1 NonAssociatedWithProgression
ENSG00000176903 PNMA1 +oo
ENSG00000175482 POLD4 --o
ENSG00000152192 POU4F1 oo+
ENSG00000128059 PPAT NonAssociatedWithProgression
ENSG00000108819 PPP1R9B -+o
ENSG00000221914 PPP2R2A o--b
ENSG00000181929 PRKAG1 ---
ENSG00000105227 PRX NonAssociatedWithProgression
ENSG00000129084 PSMA1 o--a
ENSG00000134242 PTPN22 o++b
ENSG00000144724 PTPRG NonAssociatedWithProgression
ENSG00000055917 PUM2 o-o
ENSG00000185129 PURA ---
ENSG00000185236 RAB11B ---
ENSG00000111737 RAB35 o--a
ENSG00000144566 RAB5A NonAssociatedWithProgression
ENSG00000111540 RAB5B o--b
ENSG00000164754 RAD21 o--b
ENSG00000179262 RAD23A NonAssociatedWithProgression
ENSG00000171174 RBKS -oo
ENSG00000185272 RBM11 NonAssociatedWithProgression
ENSG00000142599 RERE o++b
ENSG00000080298 RFX3 NonAssociatedWithProgression
ENSG00000138835 RGS3 o++a
ENSG00000118518 RNF146 o++b
ENSG00000163162 RNF149 o--b
ENSG00000146083 RNF44 NonAssociatedWithProgression
ENSG00000101654 RNMT NonAssociatedWithProgression
ENSG00000108443 RPS6KB1 NonAssociatedWithProgression
ENSG00000124782 RREB1 NonAssociatedWithProgression
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000133028 SCO1 NonAssociatedWithProgression
ENSG00000110876 SELPLG ---
ENSG00000132386 SERPINF1 ---
ENSG00000141469 SLC14A1 -+o
ENSG00000147100 SLC16A2 o++a
ENSG00000112759 SLC29A1 o--b
ENSG00000112473 SLC39A7 o-o
ENSG00000109062 SLC9A3R1 o--a
ENSG00000084453 SLCO1A2 o++b
ENSG00000174640 SLCO2A1 +o+
ENSG00000080503 SMARCA2 NonAssociatedWithProgression
ENSG00000124766 SOX4 +oo
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000164056 SPRY1 +o+
ENSG00000135250 SRPK2 o-o
ENSG00000101972 STAG2 o--b
ENSG00000173757 STAT5B ---
ENSG00000197321 SVIL o++b
ENSG00000054654 SYNE2 o--b
ENSG00000172660 TAF15 o--b
ENSG00000064313 TAF2 o-o
ENSG00000158710 TAGLN2 o--b
ENSG00000231925 TAPBP ---
ENSG00000148737 TCF7L2 NonAssociatedWithProgression
ENSG00000187079 TEAD1 NonAssociatedWithProgression
ENSG00000090447 TFAP4 o--b
ENSG00000114126 TFDP2 o--b
ENSG00000168286 THAP11 o--b
ENSG00000126351 THRA --o
ENSG00000140332 TLE3 ---
ENSG00000106829 TLE4 NonAssociatedWithProgression
ENSG00000064115 TM7SF3 ---
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000111669 TPI1 o-o
ENSG00000137364 TPMT o+o
ENSG00000108395 TRIM37 o+-
ENSG00000100991 TRPC4AP +-o
ENSG00000092445 TYRO3 o-+
ENSG00000160185 UBASH3A NonAssociatedWithProgression
ENSG00000119048 UBE2B o+-
ENSG00000186591 UBE2H NonAssociatedWithProgression
ENSG00000177169 ULK1 o--b
ENSG00000092929 UNC13D ---
ENSG00000132471 WBP2 NonAssociatedWithProgression
ENSG00000147548 WHSC1L1 o--b
ENSG00000165392 WRN +oo
ENSG00000170027 YWHAG o+-
ENSG00000175048 ZDHHC14 ---
ENSG00000178764 ZHX2 NonAssociatedWithProgression
ENSG00000139800 ZIC5 -+o
ENSG00000179456 ZNF238 o-o
ENSG00000170265 ZNF282 o--b
ENSG00000186918 ZNF395 o--a
ENSG00000125945 ZNF436 +o+
ENSG00000148143 ZNF462 NonAssociatedWithProgression
ENSG00000198298 ZNF485 +oo