PEACHi
GeneSet TATTATA,MIR-374 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+-o -3.5 0.04864 102.0 10.0 3.19
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000183044 ABAT o++a
ENSG00000159842 ABR oo+
ENSG00000072110 ACTN1 -+o
ENSG00000137845 ADAM10 NonAssociatedWithProgression
ENSG00000172493 AFF1 +-o
ENSG00000072364 AFF4 NonAssociatedWithProgression
ENSG00000123505 AMD1 o--a
ENSG00000011426 ANLN NonAssociatedWithProgression
ENSG00000100852 ARHGAP5 o++b
ENSG00000189079 ARID2 NonAssociatedWithProgression
ENSG00000185305 ARL15 o++b
ENSG00000102931 ARL2BP o++b
ENSG00000163399 ATP1A1 o--a
ENSG00000143515 ATP8B2 o-+
ENSG00000124788 ATXN1 oo+
ENSG00000185963 BICD2 --o
ENSG00000163170 BOLA3 NonAssociatedWithProgression
ENSG00000160058 BSDC1 ---
ENSG00000100483 C14orf138 NonAssociatedWithProgression
ENSG00000168675 C18orf1 o++a
ENSG00000111530 CAND1 NonAssociatedWithProgression
ENSG00000198898 CAPZA2 -o-
ENSG00000141582 CBX4 o+-
ENSG00000175305 CCNE2 NonAssociatedWithProgression
ENSG00000163660 CCNL1 NonAssociatedWithProgression
ENSG00000196776 CD47 NonAssociatedWithProgression
ENSG00000172216 CEBPB +-o
ENSG00000171316 CHD7 o++b
ENSG00000175040 CHST2 NonAssociatedWithProgression
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000160741 CRTC2 ---
ENSG00000003137 CYP26B1 o++a
ENSG00000117505 DR1 o--a
ENSG00000139318 DUSP6 NonAssociatedWithProgression
ENSG00000184545 DUSP8 ---
ENSG00000125977 EIF2S2 NonAssociatedWithProgression
ENSG00000110321 EIF4G2 o+-
ENSG00000100393 EP300 o++b
ENSG00000244405 ETV5 +-o
ENSG00000139083 ETV6 o++a
ENSG00000037637 FBXO42 --o
ENSG00000088832 FKBP1A ---
ENSG00000102081 FMR1 o+-
ENSG00000075420 FNDC3B +-o
ENSG00000125740 FOSB +-o
ENSG00000114861 FOXP1 oo-
ENSG00000116717 GADD45A o+o
ENSG00000107485 GATA3 o+o
ENSG00000172354 GNB2 ---
ENSG00000047932 GOPC NonAssociatedWithProgression
ENSG00000167220 HDHD2 -oo
ENSG00000092148 HECTD1 NonAssociatedWithProgression
ENSG00000128731 HERC2 +o+
ENSG00000114315 HES1 NonAssociatedWithProgression
ENSG00000010818 HIVEP2 NonAssociatedWithProgression
ENSG00000152413 HOMER1 o--b
ENSG00000170606 HSPA4 ---
ENSG00000112144 ICK o+o
ENSG00000134444 KIAA1468 o++b
ENSG00000183354 KIAA2026 NonAssociatedWithProgression
ENSG00000112984 KIF20A NonAssociatedWithProgression
ENSG00000155506 LARP1 o--b
ENSG00000174106 LEMD3 +-o
ENSG00000183814 LIN9 o+o
ENSG00000175928 LRRN1 o+o
ENSG00000049323 LTBP1 -oo
ENSG00000065559 MAP2K4 NonAssociatedWithProgression
ENSG00000069956 MAPK6 o+-
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000169057 MECP2 o--a
ENSG00000116604 MEF2D o--b
ENSG00000143995 MEIS1 o++b
ENSG00000071073 MGAT4A NonAssociatedWithProgression
ENSG00000108788 MLX o--b
ENSG00000150712 MTMR12 NonAssociatedWithProgression
ENSG00000084676 NCOA1 NonAssociatedWithProgression
ENSG00000198646 NCOA6 o--b
ENSG00000067141 NEO1 o++a
ENSG00000164190 NIPBL NonAssociatedWithProgression
ENSG00000125820 NKX2-2 o-+
ENSG00000136448 NMT1 o--b
ENSG00000183691 NOG +-o
ENSG00000113580 NR3C1 o--a
ENSG00000122126 OCRL o++a
ENSG00000110048 OSBP o+o
ENSG00000163291 PAQR3 o+o
ENSG00000124171 PARD6B -+o
ENSG00000151883 PARP8 o++b
ENSG00000157212 PAXIP1 o--b
ENSG00000185619 PCGF3 o++b
ENSG00000140992 PDPK1 -o-
ENSG00000197329 PELI1 NonAssociatedWithProgression
ENSG00000135365 PHF21A ---
ENSG00000171033 PKIA o++a
ENSG00000160199 PKNOX1 o--b
ENSG00000181690 PLAG1 oo-
ENSG00000105819 PMPCB o+o
ENSG00000163932 PRKCD NonAssociatedWithProgression
ENSG00000185129 PURA ---
ENSG00000112531 QKI NonAssociatedWithProgression
ENSG00000084733 RAB10 NonAssociatedWithProgression
ENSG00000108557 RAI1 o--b
ENSG00000006451 RALA o-+
ENSG00000160271 RALGDS o--a
ENSG00000135870 RC3H1 +-o
ENSG00000157916 RER1 -+o
ENSG00000137075 RNF38 o--b
ENSG00000198963 RORB NonAssociatedWithProgression
ENSG00000124813 RUNX2 +oo
ENSG00000179833 SERTAD2 NonAssociatedWithProgression
ENSG00000168066 SF1 o-o
ENSG00000039123 SKIV2L2 o+o
ENSG00000163104 SMARCAD1 o+o
ENSG00000180008 SOCS4 +o+
ENSG00000124766 SOX4 +oo
ENSG00000185591 SP1 o--a
ENSG00000172845 SP3 NonAssociatedWithProgression
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000136158 SPRY2 o+o
ENSG00000135250 SRPK2 o-o
ENSG00000113532 ST8SIA4 o+o
ENSG00000198252 STYX NonAssociatedWithProgression
ENSG00000131018 SYNE1 o++b
ENSG00000113649 TCERG1 o--a
ENSG00000140262 TCF12 o--a
ENSG00000090447 TFAP4 o--b
ENSG00000106829 TLE4 NonAssociatedWithProgression
ENSG00000034510 TMSB10 o--a
ENSG00000090905 TNRC6A +-o
ENSG00000170035 UBE2E3 NonAssociatedWithProgression
ENSG00000186591 UBE2H NonAssociatedWithProgression
ENSG00000111962 UST NonAssociatedWithProgression
ENSG00000220205 VAMP2 o--b
ENSG00000140153 WDR20 +oo
ENSG00000185728 YTHDF3 o--b
ENSG00000100403 ZC3H7B o--a
ENSG00000156599 ZDHHC5 o--b
ENSG00000188706 ZDHHC9 ---
ENSG00000131381 ZFYVE20 NonAssociatedWithProgression
ENSG00000172262 ZNF131 NonAssociatedWithProgression
ENSG00000171940 ZNF217 o--b
ENSG00000130856 ZNF236 +-o
ENSG00000102935 ZNF423 o--b