PEACHi
GeneSet TAGCTTT,MIR-9 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
UpRegulated -3.9 0.01814 85.0 38.0 22.99
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000136518 ACTL6A o--a
ENSG00000241978 AKAP2 NonAssociatedWithProgression
ENSG00000117020 AKT3 o++b
ENSG00000088448 ANKRD10 NonAssociatedWithProgression
ENSG00000100852 ARHGAP5 o++b
ENSG00000133794 ARNTL NonAssociatedWithProgression
ENSG00000068650 ATP11A o+o
ENSG00000124788 ATXN1 oo+
ENSG00000112182 BACH2 +-o
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000116667 C1orf21 o++a
ENSG00000148660 CAMK2G o+o
ENSG00000147044 CASK o++b
ENSG00000165410 CFL2 o--a
ENSG00000122966 CIT +-o
ENSG00000175216 CKAP5 NonAssociatedWithProgression
ENSG00000107864 CPEB3 o++b
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000111605 CPSF6 NonAssociatedWithProgression
ENSG00000146592 CREB5 +oo
ENSG00000167193 CRK o+o
ENSG00000172795 DCP2 o-o
ENSG00000215301 DDX3X oo-
ENSG00000116138 DNAJC16 NonAssociatedWithProgression
ENSG00000116675 DNAJC6 o++a
ENSG00000117505 DR1 o--a
ENSG00000178498 DTX3 o-o
ENSG00000004975 DVL2 NonAssociatedWithProgression
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000165891 E2F7 NonAssociatedWithProgression
ENSG00000184708 EIF4ENIF1 o-o
ENSG00000154380 ENAH o++b
ENSG00000115109 EPB41L5 o--a
ENSG00000112851 ERBB2IP NonAssociatedWithProgression
ENSG00000141446 ESCO1 o--b
ENSG00000120705 ETF1 o--a
ENSG00000168672 FAM84B NonAssociatedWithProgression
ENSG00000167196 FBXO22 NonAssociatedWithProgression
ENSG00000165355 FBXO33 o+-
ENSG00000114416 FXR1 ---
ENSG00000163820 FYCO1 NonAssociatedWithProgression
ENSG00000114353 GNAI2 --o
ENSG00000144674 GOLGA4 NonAssociatedWithProgression
ENSG00000171723 GPHN -+o
ENSG00000103342 GSPT1 NonAssociatedWithProgression
ENSG00000189369 GSPT2 o+-
ENSG00000163349 HIPK1 NonAssociatedWithProgression
ENSG00000164104 HMGB2 o--b
ENSG00000150093 ITGB1 NonAssociatedWithProgression
ENSG00000153814 JAZF1 ---
ENSG00000104756 KCTD9 o+o
ENSG00000170903 KIAA1826 NonAssociatedWithProgression
ENSG00000146021 KLHL3 o++b
ENSG00000108424 KPNB1 o--a
ENSG00000133703 KRAS o+o
ENSG00000001631 KRIT1 -+o
ENSG00000168216 LMBRD1 o+o
ENSG00000147650 LRP12 o++b
ENSG00000134569 LRP4 NonAssociatedWithProgression
ENSG00000151276 MAGI1 o+o
ENSG00000135341 MAP3K7 NonAssociatedWithProgression
ENSG00000169057 MECP2 o--a
ENSG00000101752 MIB1 NonAssociatedWithProgression
ENSG00000187098 MITF o--b
ENSG00000072415 MPP5 NonAssociatedWithProgression
ENSG00000150712 MTMR12 NonAssociatedWithProgression
ENSG00000059728 MXD1 NonAssociatedWithProgression
ENSG00000213672 NCKIPSD -+o
ENSG00000166579 NDEL1 o++b
ENSG00000070614 NDST1 NonAssociatedWithProgression
ENSG00000186416 NKRF o--b
ENSG00000087095 NLK oo+
ENSG00000113580 NR3C1 o--a
ENSG00000091039 OSBPL8 o-o
ENSG00000124171 PARD6B -+o
ENSG00000168300 PCMTD1 NonAssociatedWithProgression
ENSG00000152256 PDK1 NonAssociatedWithProgression
ENSG00000102221 PHF16 NonAssociatedWithProgression
ENSG00000197724 PHF2 o+o
ENSG00000129292 PHF20L1 o++b
ENSG00000156531 PHF6 o++a
ENSG00000151665 PIGF -+o
ENSG00000090975 PITPNM2 o-o
ENSG00000152192 POU4F1 oo+
ENSG00000117751 PPP1R8 NonAssociatedWithProgression
ENSG00000221823 PPP3R1 +oo
ENSG00000112739 PRPF4B o+o
ENSG00000112531 QKI NonAssociatedWithProgression
ENSG00000119396 RAB14 -o-
ENSG00000123728 RAP2C o++b
ENSG00000152700 SAR1B o++b
ENSG00000079387 SENP1 o+-
ENSG00000140264 SERF2 ---
ENSG00000119335 SET o--b
ENSG00000163935 SFMBT1 o--b
ENSG00000155380 SLC16A1 o--b
ENSG00000147454 SLC25A37 ---
ENSG00000181804 SLC9A9 o++b
ENSG00000080503 SMARCA2 NonAssociatedWithProgression
ENSG00000180008 SOCS4 +o+
ENSG00000124766 SOX4 +oo
ENSG00000115415 STAT1 oo+
ENSG00000101109 STK4 NonAssociatedWithProgression
ENSG00000196792 STRN3 o+o
ENSG00000124222 STX16 o--a
ENSG00000120948 TARDBP o--a
ENSG00000187735 TCEA1 NonAssociatedWithProgression
ENSG00000187079 TEAD1 NonAssociatedWithProgression
ENSG00000112697 TMEM30A NonAssociatedWithProgression
ENSG00000100354 TNRC6B o+o
ENSG00000076554 TPD52 +oo
ENSG00000140416 TPM1 oo+
ENSG00000197323 TRIM33 NonAssociatedWithProgression
ENSG00000106477 TSGA14 -+o
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000104343 UBE2W +o+
ENSG00000117533 VAMP4 o+-
ENSG00000175073 VCPIP1 NonAssociatedWithProgression
ENSG00000197969 VPS13A NonAssociatedWithProgression
ENSG00000095787 WAC -o-
ENSG00000015153 YAF2 -oo
ENSG00000164924 YWHAZ o--b
ENSG00000185650 ZFP36L1 o-o
ENSG00000165156 ZHX1 NonAssociatedWithProgression
ENSG00000043355 ZIC2 +-o
ENSG00000146463 ZMYM4 NonAssociatedWithProgression
ENSG00000015171 ZMYND11 NonAssociatedWithProgression
ENSG00000179456 ZNF238 o-o
ENSG00000162702 ZNF281 o+o
ENSG00000179195 ZNF664 NonAssociatedWithProgression