PEACHi
GeneSet RNA_PROCESSING (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -4.1 0.01565 92.0 26.0 12.71
DownRegulated -3.4 0.01171 92.0 69.0 54.33
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000090861 AARS ---
ENSG00000164252 AGGF1 +o+
ENSG00000198563 BAT1 o--a
ENSG00000116752 BCAS2 o+o
ENSG00000151746 BICD1 NonAssociatedWithProgression
ENSG00000168438 CDC40 -oo
ENSG00000071894 CPSF1 o--a
ENSG00000127054 CPSF3L ---
ENSG00000111605 CPSF6 NonAssociatedWithProgression
ENSG00000101343 CRNKL1 +o+
ENSG00000101138 CSTF1 o++b
ENSG00000101811 CSTF2 o-o
ENSG00000176102 CSTF3 NonAssociatedWithProgression
ENSG00000150316 CWC15 NonAssociatedWithProgression
ENSG00000138231 DBR1 o--b
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000064703 DDX20 NonAssociatedWithProgression
ENSG00000174243 DDX23 -o-
ENSG00000123136 DDX39 o--b
ENSG00000128191 DGCR8 NonAssociatedWithProgression
ENSG00000109606 DHX15 +-o
ENSG00000204560 DHX16 NonAssociatedWithProgression
ENSG00000140829 DHX38 o--a
ENSG00000067596 DHX8 o--a
ENSG00000083520 DIS3 o--a
ENSG00000130826 DKC1 o--b
ENSG00000144048 DUSP11 o--b
ENSG00000108883 EFTUD2 -o-
ENSG00000130713 EXOSC2 o--b
ENSG00000107371 EXOSC3 NonAssociatedWithProgression
ENSG00000075914 EXOSC7 NonAssociatedWithProgression
ENSG00000145982 FARS2 ---
ENSG00000105202 FBL o-o
ENSG00000082516 GEMIN5 NonAssociatedWithProgression
ENSG00000152147 GEMIN6 o+o
ENSG00000142252 GEMIN7 o--b
ENSG00000046647 GEMIN8 NonAssociatedWithProgression
ENSG00000132463 GRSF1 o--a
ENSG00000177733 HNRNPA0 NonAssociatedWithProgression
ENSG00000092199 HNRNPC o-o
ENSG00000125944 HNRNPR NonAssociatedWithProgression
ENSG00000152795 HNRPDL oo-
ENSG00000136231 IGF2BP3 o-+
ENSG00000164880 INTS1 o--b
ENSG00000104613 INTS10 NonAssociatedWithProgression
ENSG00000138785 INTS12 o--b
ENSG00000108506 INTS2 -+o
ENSG00000143624 INTS3 o--a
ENSG00000149262 INTS4 o--b
ENSG00000185085 INTS5 o--b
ENSG00000102786 INTS6 -+o
ENSG00000143493 INTS7 +oo
ENSG00000164941 INTS8 NonAssociatedWithProgression
ENSG00000104299 INTS9 o--b
ENSG00000116679 IVNS1ABP NonAssociatedWithProgression
ENSG00000121774 KHDRBS1 NonAssociatedWithProgression
ENSG00000088247 KHSRP o--b
ENSG00000151657 KIN o+o
ENSG00000175324 LSM1 o-o
ENSG00000130520 LSM4 o--a
ENSG00000106355 LSM5 o++b
ENSG00000164167 LSM6 NonAssociatedWithProgression
ENSG00000037897 METTL1 -o-
ENSG00000136937 NCBP1 o+-
ENSG00000114503 NCBP2 o--b
ENSG00000140939 NOL3 --o
ENSG00000166197 NOLC1 o--b
ENSG00000147140 NONO o--b
ENSG00000037474 NSUN2 o--a
ENSG00000167005 NUDT21 NonAssociatedWithProgression
ENSG00000083635 NUFIP1 NonAssociatedWithProgression
ENSG00000070756 PABPC1 o--b
ENSG00000090621 PABPC4 o--a
ENSG00000100410 PHF5A o--b
ENSG00000105171 POP4 NonAssociatedWithProgression
ENSG00000130810 PPAN ---
ENSG00000138398 PPIG o--b
ENSG00000165630 PRPF18 NonAssociatedWithProgression
ENSG00000117360 PRPF3 o--a
ENSG00000105618 PRPF31 NonAssociatedWithProgression
ENSG00000112739 PRPF4B o+o
ENSG00000174231 PRPF8 o--b
ENSG00000011304 PTBP1 ---
ENSG00000102317 RBM3 -o-
ENSG00000003756 RBM5 o-o
ENSG00000004534 RBM6 NonAssociatedWithProgression
ENSG00000153250 RBMS1 o++b
ENSG00000076067 RBMS2 NonAssociatedWithProgression
ENSG00000111880 RNGTT NonAssociatedWithProgression
ENSG00000101654 RNMT NonAssociatedWithProgression
ENSG00000205937 RNPS1 NonAssociatedWithProgression
ENSG00000164610 RP9 o-o
ENSG00000164587 RPS14 -o-
ENSG00000031698 SARS NonAssociatedWithProgression
ENSG00000107290 SETX o+o
ENSG00000168066 SF1 o-o
ENSG00000099995 SF3A1 o+-
ENSG00000104897 SF3A2 o--b
ENSG00000183431 SF3A3 NonAssociatedWithProgression
ENSG00000087365 SF3B2 NonAssociatedWithProgression
ENSG00000189091 SF3B3 NonAssociatedWithProgression
ENSG00000143368 SF3B4 o--b
ENSG00000116560 SFPQ +-o
ENSG00000092208 SIP1 NonAssociatedWithProgression
ENSG00000163950 SLBP NonAssociatedWithProgression
ENSG00000164609 SLU7 o--a
ENSG00000119953 SMNDC1 +oo
ENSG00000131876 SNRPA1 o--b
ENSG00000125835 SNRPB o--a
ENSG00000125870 SNRPB2 NonAssociatedWithProgression
ENSG00000124562 SNRPC o--a
ENSG00000167088 SNRPD1 o--a
ENSG00000125743 SNRPD2 o--a
ENSG00000100028 SNRPD3 o-o
ENSG00000143977 SNRPG o+-
ENSG00000128739 SNRPN o-o
ENSG00000100603 SNW1 NonAssociatedWithProgression
ENSG00000121067 SPOP o--b
ENSG00000096063 SRPK1 o--a
ENSG00000135250 SRPK2 o-o
ENSG00000133226 SRRM1 o--b
ENSG00000138385 SSB NonAssociatedWithProgression
ENSG00000135316 SYNCRIP o--b
ENSG00000113272 THG1L -oo
ENSG00000164548 TRA2A NonAssociatedWithProgression
ENSG00000072756 TRNT1 o++a
ENSG00000141759 TXNL4A NonAssociatedWithProgression
ENSG00000160201 U2AF1 NonAssociatedWithProgression
ENSG00000005007 UPF1 o--b
ENSG00000168883 USP39 o-o
ENSG00000113761 ZNF346 -o-
ENSG00000075292 ZNF638 o+o
ENSG00000132485 ZRANB2 o-+