PEACHi
GeneSet RESPONSE_TO_CHEMICAL_STIMULUS (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -3.0 0.04495 84.0 8.0 2.58
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000183044 ABAT o++a
ENSG00000160179 ABCG1 --o
ENSG00000159346 ADIPOR1 NonAssociatedWithProgression
ENSG00000006831 ADIPOR2 oo-
ENSG00000159461 AMFR o-o
ENSG00000214274 ANG o++b
ENSG00000137074 APTX NonAssociatedWithProgression
ENSG00000214435 AS3MT o++a
ENSG00000118217 ATF6 o--a
ENSG00000177556 ATOX1 o-+
ENSG00000123191 ATP7B o++b
ENSG00000137936 BCAR3 o++b
ENSG00000142867 BCL10 o+o
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000137274 BPHL o--b
ENSG00000012048 BRCA1 NonAssociatedWithProgression
ENSG00000106804 C5 NonAssociatedWithProgression
ENSG00000126353 CCR7 +o+
ENSG00000173585 CCR9 +o+
ENSG00000131165 CHMP1A o--a
ENSG00000217555 CKLF o++a
ENSG00000179979 CRIPAK NonAssociatedWithProgression
ENSG00000171793 CTPS o-o
ENSG00000121966 CXCR4 o--b
ENSG00000180902 D2HGDH NonAssociatedWithProgression
ENSG00000136986 DERL1 NonAssociatedWithProgression
ENSG00000072849 DERL2 o-o
ENSG00000128191 DGCR8 NonAssociatedWithProgression
ENSG00000077044 DGKD NonAssociatedWithProgression
ENSG00000116133 DHCR24 NonAssociatedWithProgression
ENSG00000086061 DNAJA1 ---
ENSG00000132002 DNAJB1 NonAssociatedWithProgression
ENSG00000135924 DNAJB2 ---
ENSG00000162616 DNAJB4 o++b
ENSG00000134516 DOCK2 o--a
ENSG00000120129 DUSP1 o--a
ENSG00000172071 EIF2AK3 NonAssociatedWithProgression
ENSG00000111361 EIF2B1 -+o
ENSG00000119718 EIF2B2 o--a
ENSG00000070785 EIF2B3 NonAssociatedWithProgression
ENSG00000115211 EIF2B4 o-o
ENSG00000145191 EIF2B5 ---
ENSG00000143420 ENSA oo-
ENSG00000104884 ERCC2 ---
ENSG00000163161 ERCC3 o-o
ENSG00000049167 ERCC8 -+o
ENSG00000107485 GATA3 o+o
ENSG00000001084 GCLC NonAssociatedWithProgression
ENSG00000023909 GCLM o+o
ENSG00000023572 GLRX2 -+o
ENSG00000114353 GNAI2 --o
ENSG00000125166 GOT2 o--a
ENSG00000233276 GPX1 ---
ENSG00000100983 GSS NonAssociatedWithProgression
ENSG00000180353 HCLS1 o--a
ENSG00000051108 HERPUD1 +oo
ENSG00000174775 HRAS o--b
ENSG00000204388 HSPA1B o--b
ENSG00000164070 HSPA4L -oo
ENSG00000173110 HSPA6 NonAssociatedWithProgression
ENSG00000106211 HSPB1 o--b
ENSG00000115541 HSPE1 o+-
ENSG00000120694 HSPH1 o+-
ENSG00000113520 IL4 NonAssociatedWithProgression
ENSG00000160255 ITGB2 o--a
ENSG00000135643 KCNMB4 NonAssociatedWithProgression
ENSG00000150457 LATS2 o++a
ENSG00000182866 LCK o-o
ENSG00000169032 MAP2K1 NonAssociatedWithProgression
ENSG00000100030 MAPK1 NonAssociatedWithProgression
ENSG00000112062 MAPK14 o++b
ENSG00000188786 MTF1 o+-
ENSG00000198646 NCOA6 o--b
ENSG00000104419 NDRG1 o--b
ENSG00000184752 NDUFA12 o+o
ENSG00000184983 NDUFA6 o++b
ENSG00000065518 NDUFB4 o-+
ENSG00000158864 NDUFS2 --o
ENSG00000164258 NDUFS4 NonAssociatedWithProgression
ENSG00000110717 NDUFS8 o--a
ENSG00000181019 NQO1 NonAssociatedWithProgression
ENSG00000106268 NUDT1 o--a
ENSG00000147162 OGT o-o
ENSG00000172939 OXSR1 NonAssociatedWithProgression
ENSG00000249915 PDCD6 NonAssociatedWithProgression
ENSG00000090470 PDCD7 NonAssociatedWithProgression
ENSG00000107438 PDLIM1 ---
ENSG00000051382 PIK3CB -o-
ENSG00000122861 PLAU +o+
ENSG00000141682 PMAIP1 oo-
ENSG00000167815 PRDX2 --o
ENSG00000126432 PRDX5 o--a
ENSG00000117592 PRDX6 NonAssociatedWithProgression
ENSG00000171867 PRNP NonAssociatedWithProgression
ENSG00000222014 RAB6C o++b
ENSG00000006451 RALA o-+
ENSG00000017797 RALBP1 --o
ENSG00000239306 RBM14 o--a
ENSG00000173039 RELA o--a
ENSG00000114125 RNF7 o+o
ENSG00000100784 RPS6KA5 NonAssociatedWithProgression
ENSG00000149257 SERPINH1 --o
ENSG00000115840 SLC25A12 o++a
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000145740 SLC30A5 o+o
ENSG00000142168 SOD1 NonAssociatedWithProgression
ENSG00000112096 SOD2 o++b
ENSG00000197471 SPN o--a
ENSG00000115694 STK25 --o
ENSG00000196235 SUPT5H o--b
ENSG00000198900 TOP1 o+o
ENSG00000136827 TOR1A NonAssociatedWithProgression
ENSG00000136816 TOR1B +o+
ENSG00000196689 TRPV1 o++a
ENSG00000165699 TSC1 NonAssociatedWithProgression
ENSG00000130338 TULP4 NonAssociatedWithProgression
ENSG00000184470 TXNRD2 --o
ENSG00000124164 VAPB NonAssociatedWithProgression
ENSG00000165280 VCP o+-