PEACHi
GeneSet REGULATION_OF_TRANSCRIPTION_FROM_RNA_POLYMERASE_II_PROMOTER (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -2.6 0.04636 146.0 102.0 86.22
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000097007 ABL1 o--a
ENSG00000133794 ARNTL NonAssociatedWithProgression
ENSG00000128272 ATF4 o--b
ENSG00000169136 ATF5 ---
ENSG00000118217 ATF6 o--a
ENSG00000171681 ATF7IP ---
ENSG00000113916 BCL6 +-o
ENSG00000117475 BLZF1 NonAssociatedWithProgression
ENSG00000171634 BPTF NonAssociatedWithProgression
ENSG00000012048 BRCA1 NonAssociatedWithProgression
ENSG00000166164 BRD7 o--a
ENSG00000112983 BRD8 o-+
ENSG00000106245 BUD31 -o-
ENSG00000105176 C19orf2 o+-
ENSG00000134480 CCNH -o-
ENSG00000134058 CDK7 o+o
ENSG00000153922 CHD1 o--b
ENSG00000173575 CHD2 o--b
ENSG00000170004 CHD3 o--a
ENSG00000111642 CHD4 o--b
ENSG00000144021 CIAO1 -+o
ENSG00000164442 CITED2 o++b
ENSG00000143162 CREG1 oo+
ENSG00000167193 CRK o+o
ENSG00000060138 CSDA -o-
ENSG00000102974 CTCF o--b
ENSG00000160967 CUX1 o+o
ENSG00000105516 DBP ---
ENSG00000124795 DEK NonAssociatedWithProgression
ENSG00000130816 DNMT1 o-o
ENSG00000117505 DR1 o--a
ENSG00000175550 DRAP1 o--b
ENSG00000101412 E2F1 o--b
ENSG00000169016 E2F6 oo-
ENSG00000120690 ELF1 o--b
ENSG00000109381 ELF2 NonAssociatedWithProgression
ENSG00000126767 ELK1 ---
ENSG00000134759 ELP2 ---
ENSG00000134014 ELP3 o+o
ENSG00000109911 ELP4 NonAssociatedWithProgression
ENSG00000074800 ENO1 o--b
ENSG00000120616 EPC1 o--b
ENSG00000104884 ERCC2 ---
ENSG00000163161 ERCC3 o-o
ENSG00000105722 ERF ---
ENSG00000170345 FOS NonAssociatedWithProgression
ENSG00000125740 FOSB +-o
ENSG00000141568 FOXK2 o--a
ENSG00000118689 FOXO3 NonAssociatedWithProgression
ENSG00000143458 GABPB2 NonAssociatedWithProgression
ENSG00000162676 GFI1 o-o
ENSG00000110768 GTF2H1 o++b
ENSG00000147099 HDAC8 oo-
ENSG00000186834 HEXIM1 o--a
ENSG00000168517 HEXIM2 NonAssociatedWithProgression
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000100084 HIRA ---
ENSG00000189403 HMGB1 o--b
ENSG00000164104 HMGB2 o--b
ENSG00000230989 HSBP1 NonAssociatedWithProgression
ENSG00000109854 HTATIP2 o+-
ENSG00000102241 HTATSF1 o+o
ENSG00000070061 IKBKAP NonAssociatedWithProgression
ENSG00000161405 IKZF3 -o-
ENSG00000113520 IL4 NonAssociatedWithProgression
ENSG00000168310 IRF2 o++b
ENSG00000185507 IRF7 ---
ENSG00000153814 JAZF1 ---
ENSG00000152409 JMY o--a
ENSG00000171223 JUNB ---
ENSG00000130522 JUND o--b
ENSG00000155090 KLF10 o--b
ENSG00000118922 KLF12 o+o
ENSG00000118263 KLF7 oo-
ENSG00000189067 LITAF o++a
ENSG00000161021 MAML1 o--b
ENSG00000135679 MDM2 -o-
ENSG00000198625 MDM4 o-o
ENSG00000169057 MECP2 o--a
ENSG00000125686 MED1 NonAssociatedWithProgression
ENSG00000108510 MED13 NonAssociatedWithProgression
ENSG00000180182 MED14 -oo
ENSG00000124641 MED20 NonAssociatedWithProgression
ENSG00000152944 MED21 -o-
ENSG00000112282 MED23 NonAssociatedWithProgression
ENSG00000105085 MED26 o--a
ENSG00000160563 MED27 o--a
ENSG00000133997 MED6 NonAssociatedWithProgression
ENSG00000155868 MED7 NonAssociatedWithProgression
ENSG00000134138 MEIS2 o++b
ENSG00000133895 MEN1 ---
ENSG00000186260 MKL2 +o+
ENSG00000130675 MNX1 -oo
ENSG00000188786 MTF1 o+-
ENSG00000123933 MXD4 ---
ENSG00000136997 MYC o--b
ENSG00000198646 NCOA6 o--b
ENSG00000072736 NFATC3 o--a
ENSG00000086102 NFX1 NonAssociatedWithProgression
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000170485 NPAS2 o-+
ENSG00000106459 NRF1 NonAssociatedWithProgression
ENSG00000180530 NRIP1 o++a
ENSG00000165671 NSD1 NonAssociatedWithProgression
ENSG00000083635 NUFIP1 NonAssociatedWithProgression
ENSG00000177425 PAWR o++b
ENSG00000167081 PBX3 NonAssociatedWithProgression
ENSG00000105717 PBX4 NonAssociatedWithProgression
ENSG00000135365 PHF21A ---
ENSG00000118495 PLAGL1 NonAssociatedWithProgression
ENSG00000152192 POU4F1 oo+
ENSG00000112033 PPARD ---
ENSG00000155846 PPARGC1B NonAssociatedWithProgression
ENSG00000108946 PRKAR1A o+-
ENSG00000101161 PRPF6 o-o
ENSG00000139687 RB1 NonAssociatedWithProgression
ENSG00000101773 RBBP8 NonAssociatedWithProgression
ENSG00000239306 RBM14 o--a
ENSG00000013561 RNF14 NonAssociatedWithProgression
ENSG00000063978 RNF4 NonAssociatedWithProgression
ENSG00000159216 RUNX1 o--b
ENSG00000175792 RUVBL1 ---
ENSG00000186350 RXRA ---
ENSG00000163602 RYBP -o-
ENSG00000150459 SAP18 o-o
ENSG00000101082 SLA2 o+o
ENSG00000175387 SMAD2 NonAssociatedWithProgression
ENSG00000166949 SMAD3 NonAssociatedWithProgression
ENSG00000080503 SMARCA2 NonAssociatedWithProgression
ENSG00000138375 SMARCAL1 -+o
ENSG00000099956 SMARCB1 ---
ENSG00000173473 SMARCC1 o--a
ENSG00000139613 SMARCC2 --o
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000108604 SMARCD2 o--b
ENSG00000082014 SMARCD3 +oo
ENSG00000073584 SMARCE1 -oo
ENSG00000159210 SNF8 o--a
ENSG00000100603 SNW1 NonAssociatedWithProgression
ENSG00000112096 SOD2 o++b
ENSG00000185591 SP1 o--a
ENSG00000167182 SP2 +oo
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000161011 SQSTM1 ---
ENSG00000080603 SRCAP o--b
ENSG00000072310 SREBF1 o--a
ENSG00000198911 SREBF2 ---
ENSG00000168610 STAT3 o--b
ENSG00000113387 SUB1 +-o
ENSG00000196284 SUPT3H ---
ENSG00000213246 SUPT4H1 o--a
ENSG00000196235 SUPT5H o--b
ENSG00000162227 TAF6L ---
ENSG00000059588 TARBP1 -+o
ENSG00000139546 TARBP2 o-o
ENSG00000172465 TCEAL1 oo+
ENSG00000154582 TCEB1 NonAssociatedWithProgression
ENSG00000011007 TCEB3 NonAssociatedWithProgression
ENSG00000140262 TCF12 o--a
ENSG00000137310 TCF19 o-+
ENSG00000141002 TCF25 o-o
ENSG00000081059 TCF7 o+-
ENSG00000148737 TCF7L2 NonAssociatedWithProgression
ENSG00000087510 TFAP2C o--a
ENSG00000090447 TFAP4 o--b
ENSG00000198176 TFDP1 -o-
ENSG00000177426 TGIF1 o+o
ENSG00000054118 THRAP3 o--a
ENSG00000151923 TIAL1 o+o
ENSG00000067182 TNFRSF1A NonAssociatedWithProgression
ENSG00000141510 TP53 o--a
ENSG00000182606 TRAK1 oo+
ENSG00000204713 TRIM27 o--a
ENSG00000130726 TRIM28 o--a
ENSG00000118900 UBN1 o--b
ENSG00000153560 UBP1 o-+
ENSG00000034063 UHRF1 o--b
ENSG00000136451 VEZF1 NonAssociatedWithProgression
ENSG00000134086 VHL ---
ENSG00000163159 VPS72 o--b
ENSG00000100811 YY1 o--b
ENSG00000148516 ZEB1 oo-
ENSG00000198081 ZFP161 NonAssociatedWithProgression
ENSG00000122515 ZMIZ2 o--b
ENSG00000015171 ZMYND11 NonAssociatedWithProgression
ENSG00000196646 ZNF136 NonAssociatedWithProgression
ENSG00000166478 ZNF143 o+o
ENSG00000163848 ZNF148 NonAssociatedWithProgression
ENSG00000103343 ZNF174 o++b
ENSG00000188629 ZNF177 -+o
ENSG00000136870 ZNF189 +o+
ENSG00000166261 ZNF202 ---
ENSG00000179456 ZNF238 o-o
ENSG00000213096 ZNF254 NonAssociatedWithProgression
ENSG00000162702 ZNF281 o+o
ENSG00000169131 ZNF354A o-o
ENSG00000165244 ZNF367 NonAssociatedWithProgression
ENSG00000065029 ZNF76 NonAssociatedWithProgression