PEACHi
GeneSet PLASMA_MEMBRANE (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -3.0 0.03493 426.0 337.0 310.37
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000165029 ABCA1 --o
ENSG00000125257 ABCC4 o++a
ENSG00000114770 ABCC5 NonAssociatedWithProgression
ENSG00000160179 ABCG1 --o
ENSG00000110881 ACCN2 --o
ENSG00000213199 ACCN3 NonAssociatedWithProgression
ENSG00000136518 ACTL6A o--a
ENSG00000072110 ACTN1 -+o
ENSG00000114739 ACVR2B +-o
ENSG00000151694 ADAM17 +-o
ENSG00000138031 ADCY3 o-o
ENSG00000121281 ADCY7 -+o
ENSG00000182551 ADI1 o--a
ENSG00000128271 ADORA2A o--a
ENSG00000170425 ADORA2B +-o
ENSG00000130706 ADRM1 oo-
ENSG00000160216 AGPAT3 -o-
ENSG00000118507 AKAP7 o++a
ENSG00000142208 AKT1 ---
ENSG00000166971 AKTIP NonAssociatedWithProgression
ENSG00000182718 ANXA2 o++a
ENSG00000131471 AOC3 NonAssociatedWithProgression
ENSG00000042753 AP2S1 o--b
ENSG00000134982 APC NonAssociatedWithProgression
ENSG00000117362 APH1A o--a
ENSG00000204444 APOM o--a
ENSG00000142192 APP o++b
ENSG00000143761 ARF1 o--b
ENSG00000165527 ARF6 NonAssociatedWithProgression
ENSG00000132254 ARFIP2 ---
ENSG00000076928 ARHGEF1 o--b
ENSG00000141480 ARRB2 ---
ENSG00000116539 ASH1L o-o
ENSG00000163399 ATP1A1 o--a
ENSG00000143153 ATP1B1 -oo
ENSG00000069849 ATP1B3 o--b
ENSG00000174437 ATP2A2 -o-
ENSG00000070961 ATP2B1 +-o
ENSG00000058668 ATP2B4 o++b
ENSG00000182220 ATP6AP2 -+o
ENSG00000114573 ATP6V1A NonAssociatedWithProgression
ENSG00000165240 ATP7A o++b
ENSG00000123191 ATP7B o++b
ENSG00000088812 ATRN NonAssociatedWithProgression
ENSG00000103126 AXIN1 +-o
ENSG00000086062 B4GALT1 ---
ENSG00000175866 BAIAP2 NonAssociatedWithProgression
ENSG00000185825 BCAP31 ---
ENSG00000142867 BCL10 o+o
ENSG00000103429 BFAR o++b
ENSG00000204217 BMPR2 NonAssociatedWithProgression
ENSG00000112763 BTN2A1 o+o
ENSG00000108561 C1QBP NonAssociatedWithProgression
ENSG00000067191 CACNB1 ---
ENSG00000182389 CACNB4 o++a
ENSG00000160014 CALM3 o--a
ENSG00000135387 CAPRIN1 -o-
ENSG00000198286 CARD11 ---
ENSG00000147044 CASK o++b
ENSG00000110395 CBL o--b
ENSG00000115355 CCDC88A +o+
ENSG00000126353 CCR7 +o+
ENSG00000173585 CCR9 +o+
ENSG00000177697 CD151 o-+
ENSG00000135535 CD164 oo-
ENSG00000158485 CD1B NonAssociatedWithProgression
ENSG00000158481 CD1C ---
ENSG00000158473 CD1D NonAssociatedWithProgression
ENSG00000198821 CD247 NonAssociatedWithProgression
ENSG00000178562 CD28 o+o
ENSG00000004468 CD38 -+o
ENSG00000198851 CD3E o--a
ENSG00000010610 CD4 o--b
ENSG00000117335 CD46 NonAssociatedWithProgression
ENSG00000196776 CD47 NonAssociatedWithProgression
ENSG00000117091 CD48 NonAssociatedWithProgression
ENSG00000110448 CD5 o--a
ENSG00000169442 CD52 o--a
ENSG00000143119 CD53 NonAssociatedWithProgression
ENSG00000196352 CD55 o+o
ENSG00000013725 CD6 o--b
ENSG00000135404 CD63 o--a
ENSG00000173762 CD7 ---
ENSG00000125726 CD70 NonAssociatedWithProgression
ENSG00000137101 CD72 o-o
ENSG00000105369 CD79A ---
ENSG00000110651 CD81 o--b
ENSG00000112149 CD83 -+o
ENSG00000153283 CD96 o++a
ENSG00000002586 CD99 o-o
ENSG00000070831 CDC42 +oo
ENSG00000143776 CDC42BPA NonAssociatedWithProgression
ENSG00000197622 CDC42SE1 o--a
ENSG00000158985 CDC42SE2 o-o
ENSG00000001626 CFTR o--b
ENSG00000120903 CHRNA2 o--b
ENSG00000080644 CHRNA3 o+o
ENSG00000171365 CLCN5 -+o
ENSG00000157224 CLDN12 +o+
ENSG00000106404 CLDN15 o--b
ENSG00000110852 CLEC2B NonAssociatedWithProgression
ENSG00000069493 CLEC2D -oo
ENSG00000188603 CLN3 o++b
ENSG00000104853 CLPTM1 o--a
ENSG00000064666 CNN2 o--b
ENSG00000144785 CNPY2 ---
ENSG00000179979 CRIPAK NonAssociatedWithProgression
ENSG00000103653 CSK o--b
ENSG00000101266 CSNK2A1 o--a
ENSG00000168036 CTNNB1 o--b
ENSG00000154639 CXADR NonAssociatedWithProgression
ENSG00000121966 CXCR4 o--b
ENSG00000153071 DAB2 -o-
ENSG00000173402 DAG1 o--a
ENSG00000057019 DCBLD2 o++a
ENSG00000143753 DEGS1 oo+
ENSG00000077044 DGKD NonAssociatedWithProgression
ENSG00000075711 DLG1 NonAssociatedWithProgression
ENSG00000151914 DST -+o
ENSG00000047579 DTNBP1 o-o
ENSG00000147155 EBP o--b
ENSG00000102189 EEA1 NonAssociatedWithProgression
ENSG00000169242 EFNA1 oo+
ENSG00000143590 EFNA3 ---
ENSG00000243364 EFNA4 o++a
ENSG00000125266 EFNB2 o-o
ENSG00000111361 EIF2B1 -+o
ENSG00000155849 ELMO1 o+o
ENSG00000159023 EPB41 -o-
ENSG00000079819 EPB41L2 o-o
ENSG00000154928 EPHB1 -oo
ENSG00000085832 EPS15 +-o
ENSG00000112851 ERBB2IP NonAssociatedWithProgression
ENSG00000196405 EVL NonAssociatedWithProgression
ENSG00000134824 FADS2 NonAssociatedWithProgression
ENSG00000168672 FAM84B NonAssociatedWithProgression
ENSG00000077782 FGFR1 o++a
ENSG00000137312 FLOT1 --o
ENSG00000037280 FLT4 NonAssociatedWithProgression
ENSG00000162769 FLVCR1 +-o
ENSG00000166225 FRS2 NonAssociatedWithProgression
ENSG00000010810 FYN +oo
ENSG00000180340 FZD2 o--b
ENSG00000104290 FZD3 o++a
ENSG00000155760 FZD7 o++a
ENSG00000180447 GAS1 o++b
ENSG00000146729 GBAS o+o
ENSG00000115271 GCA --o
ENSG00000165474 GJB2 oo-
ENSG00000104499 GML o++b
ENSG00000088256 GNA11 ---
ENSG00000060558 GNA15 o--b
ENSG00000156052 GNAQ oo+
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000128266 GNAZ NonAssociatedWithProgression
ENSG00000168243 GNG4 o--a
ENSG00000135052 GOLM1 o++a
ENSG00000125166 GOT2 o--a
ENSG00000063660 GPC1 ---
ENSG00000077585 GPR137B o+o
ENSG00000144230 GPR17 o-+
ENSG00000166073 GPR176 NonAssociatedWithProgression
ENSG00000183150 GPR19 oo+
ENSG00000181773 GPR3 ---
ENSG00000183134 GPR44 ---
ENSG00000140030 GPR65 o++b
ENSG00000170412 GPRC5C NonAssociatedWithProgression
ENSG00000106070 GRB10 oo-
ENSG00000196277 GRM7 NonAssociatedWithProgression
ENSG00000113070 HBEGF o++a
ENSG00000163517 HDAC11 -oo
ENSG00000115677 HDLBP o--a
ENSG00000152413 HOMER1 o--b
ENSG00000107521 HPS1 NonAssociatedWithProgression
ENSG00000174775 HRAS o--b
ENSG00000125430 HS3ST3B1 +o+
ENSG00000136720 HS6ST1 ---
ENSG00000072506 HSD17B10 o--b
ENSG00000108622 ICAM2 NonAssociatedWithProgression
ENSG00000185885 IFITM1 o--a
ENSG00000142166 IFNAR1 NonAssociatedWithProgression
ENSG00000159110 IFNAR2 -oo
ENSG00000027697 IFNGR1 NonAssociatedWithProgression
ENSG00000159128 IFNGR2 o++a
ENSG00000197081 IGF2R +-o
ENSG00000110324 IL10RA +o+
ENSG00000243646 IL10RB o--a
ENSG00000137070 IL11RA NonAssociatedWithProgression
ENSG00000196083 IL1RAP o+o
ENSG00000104998 IL27RA o++b
ENSG00000147168 IL2RG o-o
ENSG00000171105 INSR +o+
ENSG00000143127 ITGA10 NonAssociatedWithProgression
ENSG00000083457 ITGAE o++a
ENSG00000150093 ITGB1 NonAssociatedWithProgression
ENSG00000132470 ITGB4 ---
ENSG00000150995 ITPR1 o++b
ENSG00000096433 ITPR3 o-o
ENSG00000143543 JTB o-o
ENSG00000151079 KCNA6 NonAssociatedWithProgression
ENSG00000116396 KCNC4 NonAssociatedWithProgression
ENSG00000171126 KCNG3 o--a
ENSG00000055118 KCNH2 -oo
ENSG00000187486 KCNJ11 -+o
ENSG00000168135 KCNJ4 --o
ENSG00000099337 KCNK6 ---
ENSG00000135643 KCNMB4 NonAssociatedWithProgression
ENSG00000185760 KCNQ5 o++a
ENSG00000126777 KTN1 NonAssociatedWithProgression
ENSG00000185896 LAMP1 o-o
ENSG00000115365 LANCL1 NonAssociatedWithProgression
ENSG00000132434 LANCL2 NonAssociatedWithProgression
ENSG00000162511 LAPTM5 o--b
ENSG00000213658 LAT NonAssociatedWithProgression
ENSG00000122188 LAX1 o+-
ENSG00000182866 LCK o-o
ENSG00000168924 LETM1 ---
ENSG00000050405 LIMA1 -+o
ENSG00000113441 LNPEP o++b
ENSG00000118308 LRMP o--a
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000147650 LRP12 o++b
ENSG00000070018 LRP6 NonAssociatedWithProgression
ENSG00000163956 LRPAP1 ---
ENSG00000213903 LTB4R ---
ENSG00000160932 LY6E o--b
ENSG00000154589 LY96 o++a
ENSG00000003056 M6PR o-o
ENSG00000110514 MADD o--b
ENSG00000090316 MAEA o+-
ENSG00000151276 MAGI1 o+o
ENSG00000172005 MAL o--a
ENSG00000186868 MAPT o++a
ENSG00000175130 MARCKSL1 ---
ENSG00000163975 MFI2 NonAssociatedWithProgression
ENSG00000108960 MMD +o+
ENSG00000102996 MMP15 ---
ENSG00000108852 MPP2 NonAssociatedWithProgression
ENSG00000158887 MPZ ---
ENSG00000197965 MPZL1 o+o
ENSG00000147065 MSN NonAssociatedWithProgression
ENSG00000066855 MTFR1 o++b
ENSG00000185499 MUC1 +-o
ENSG00000176945 MUC20 oo+
ENSG00000100345 MYH9 -o-
ENSG00000197879 MYO1C ---
ENSG00000172915 NBEA -+o
ENSG00000123338 NCKAP1L -oo
ENSG00000096264 NCR2 ---
ENSG00000162736 NCSTN o--b
ENSG00000157191 NECAP2 o-o
ENSG00000067141 NEO1 o++a
ENSG00000186575 NF2 o--b
ENSG00000171840 NINJ2 o--b
ENSG00000134250 NOTCH2 o-o
ENSG00000074181 NOTCH3 o--b
ENSG00000141458 NPC1 o++b
ENSG00000159899 NPR2 ---
ENSG00000070081 NUCB2 -+o
ENSG00000125450 NUP85 o--b
ENSG00000054277 OPN3 NonAssociatedWithProgression
ENSG00000112038 OPRM1 ---
ENSG00000182500 ORAI1 NonAssociatedWithProgression
ENSG00000180914 OXTR -oo
ENSG00000108405 P2RX1 NonAssociatedWithProgression
ENSG00000135124 P2RX4 --o
ENSG00000083454 P2RX5 o--b
ENSG00000149269 PAK1 oo+
ENSG00000148498 PARD3 NonAssociatedWithProgression
ENSG00000102981 PARD6A --o
ENSG00000124171 PARD6B -+o
ENSG00000112852 PCDHB2 o++b
ENSG00000140992 PDPK1 -o-
ENSG00000101856 PGRMC1 o-o
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000155252 PI4K2A o++b
ENSG00000073921 PICALM +o+
ENSG00000100151 PICK1 ---
ENSG00000101464 PIGU o--a
ENSG00000145337 PIGY o+-
ENSG00000008710 PKD1 o--a
ENSG00000118762 PKD2 oo+
ENSG00000144283 PKP4 NonAssociatedWithProgression
ENSG00000102007 PLP2 o--a
ENSG00000188313 PLSCR1 o++b
ENSG00000100941 PNN oo-
ENSG00000128567 PODXL oo+
ENSG00000114631 PODXL2 ---
ENSG00000067113 PPAP2A o+-
ENSG00000131238 PPT1 +-o
ENSG00000067606 PRKCZ ---
ENSG00000171867 PRNP NonAssociatedWithProgression
ENSG00000007038 PRSS21 o--a
ENSG00000080815 PSEN1 o-o
ENSG00000205155 PSENEN NonAssociatedWithProgression
ENSG00000183527 PSMG1 oo+
ENSG00000185920 PTCH1 o++b
ENSG00000117425 PTCH2 -+o
ENSG00000112655 PTK7 o--a
ENSG00000132670 PTPRA o--a
ENSG00000081237 PTPRC o+o
ENSG00000213402 PTPRCAP o-o
ENSG00000153707 PTPRD NonAssociatedWithProgression
ENSG00000142949 PTPRF ---
ENSG00000144724 PTPRG NonAssociatedWithProgression
ENSG00000152894 PTPRK NonAssociatedWithProgression
ENSG00000173482 PTPRM NonAssociatedWithProgression
ENSG00000155093 PTPRN2 -+o
ENSG00000119396 RAB14 -o-
ENSG00000124209 RAB22A o+-
ENSG00000111737 RAB35 o--a
ENSG00000111540 RAB5B o--b
ENSG00000158987 RAPGEF6 NonAssociatedWithProgression
ENSG00000185989 RASA3 o+-
ENSG00000173653 RCE1 o--b
ENSG00000174136 RGMB o++b
ENSG00000090104 RGS1 o++b
ENSG00000171700 RGS19 -+o
ENSG00000143878 RHOB +-o
ENSG00000111785 RIC8B NonAssociatedWithProgression
ENSG00000143622 RIT1 o+o
ENSG00000172602 RND1 -o-
ENSG00000176393 RNPEP o--a
ENSG00000169071 ROR2 NonAssociatedWithProgression
ENSG00000163785 RYK --o
ENSG00000052802 SC4MOL +-o
ENSG00000073060 SCARB1 o--b
ENSG00000138760 SCARB2 o++b
ENSG00000137575 SDCBP oo-
ENSG00000188404 SELL -+o
ENSG00000110876 SELPLG ---
ENSG00000135622 SEMA4F o++a
ENSG00000184702 SEPT5 NonAssociatedWithProgression
ENSG00000111897 SERINC1 o-+
ENSG00000163069 SGCB NonAssociatedWithProgression
ENSG00000160999 SH2B2 ---
ENSG00000160691 SHC1 o--a
ENSG00000146950 SHROOM2 o++b
ENSG00000137078 SIT1 o--b
ENSG00000101082 SLA2 o+o
ENSG00000110911 SLC11A2 NonAssociatedWithProgression
ENSG00000064651 SLC12A2 o-o
ENSG00000113504 SLC12A7 o--b
ENSG00000141469 SLC14A1 -+o
ENSG00000147100 SLC16A2 o++a
ENSG00000141526 SLC16A3 o-o
ENSG00000108932 SLC16A6 o++b
ENSG00000119899 SLC17A5 +o+
ENSG00000173638 SLC19A1 ---
ENSG00000115902 SLC1A4 NonAssociatedWithProgression
ENSG00000105281 SLC1A5 o--b
ENSG00000144136 SLC20A1 o-o
ENSG00000168575 SLC20A2 o--b
ENSG00000197375 SLC22A5 o++b
ENSG00000089057 SLC23A2 +-o
ENSG00000108528 SLC25A11 ---
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000102078 SLC25A14 o-o
ENSG00000100372 SLC25A17 o-+
ENSG00000151729 SLC25A4 -oo
ENSG00000005022 SLC25A5 NonAssociatedWithProgression
ENSG00000155850 SLC26A2 +o+
ENSG00000112759 SLC29A1 o--b
ENSG00000174669 SLC29A2 ---
ENSG00000145740 SLC30A5 o+o
ENSG00000169359 SLC33A1 o++b
ENSG00000164414 SLC35A1 NonAssociatedWithProgression
ENSG00000138449 SLC40A1 +o+
ENSG00000149150 SLC43A1 o--b
ENSG00000080493 SLC4A4 -+o
ENSG00000198743 SLC5A3 NonAssociatedWithProgression
ENSG00000138074 SLC5A6 ---
ENSG00000163817 SLC6A20 NonAssociatedWithProgression
ENSG00000139514 SLC7A1 +-o
ENSG00000103064 SLC7A6 o--b
ENSG00000155465 SLC7A7 +o+
ENSG00000065054 SLC9A3R2 -oo
ENSG00000174640 SLCO2A1 +o+
ENSG00000163681 SLMAP o+o
ENSG00000092531 SNAP23 o+o
ENSG00000099940 SNAP29 o-+
ENSG00000168807 SNTB2 o--b
ENSG00000142168 SOD1 NonAssociatedWithProgression
ENSG00000197471 SPN o--a
ENSG00000115525 ST3GAL5 o-+
ENSG00000117758 STX12 NonAssociatedWithProgression
ENSG00000099365 STX1B NonAssociatedWithProgression
ENSG00000111450 STX2 +-o
ENSG00000166900 STX3 -+o
ENSG00000103496 STX4 o-o
ENSG00000170310 STX8 NonAssociatedWithProgression
ENSG00000197321 SVIL o++b
ENSG00000100321 SYNGR1 oo+
ENSG00000108639 SYNGR2 o--a
ENSG00000008282 SYPL1 o+-
ENSG00000072274 TFRC o++a
ENSG00000149809 TM7SF2 o-o
ENSG00000125304 TM9SF2 NonAssociatedWithProgression
ENSG00000178307 TMEM11 ---
ENSG00000118600 TMEM5 -oo
ENSG00000142188 TMEM50B o++a
ENSG00000067182 TNFRSF1A NonAssociatedWithProgression
ENSG00000117586 TNFSF4 o++a
ENSG00000163519 TRAT1 NonAssociatedWithProgression
ENSG00000204713 TRIM27 o--a
ENSG00000067445 TRO --o
ENSG00000144935 TRPC1 NonAssociatedWithProgression
ENSG00000196689 TRPV1 o++a
ENSG00000187688 TRPV2 -o-
ENSG00000165409 TSHR -o-
ENSG00000106537 TSPAN13 o++b
ENSG00000214063 TSPAN4 ---
ENSG00000156298 TSPAN7 -+o
ENSG00000092445 TYRO3 o-+
ENSG00000152818 UTRN -+o
ENSG00000139190 VAMP1 o++b
ENSG00000220205 VAMP2 o--b
ENSG00000168899 VAMP5 --o
ENSG00000101558 VAPA NonAssociatedWithProgression
ENSG00000035403 VCL o++a
ENSG00000106018 VIPR2 o--b
ENSG00000126562 WNK4 o--b
ENSG00000143324 XPR1 -+o
ENSG00000106636 YKT6 o--a
ENSG00000115085 ZAP70 o--b
ENSG00000159840 ZYX oo+