PEACHi
GeneSet ORGANELLE_MEMBRANE (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -2.7 0.03413 168.0 12.0 5.15
o-o -2.5 0.04732 168.0 24.0 14.09
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000094914 AAAS o--a
ENSG00000131269 ABCB7 o-o
ENSG00000125257 ABCC4 o++a
ENSG00000117528 ABCD3 NonAssociatedWithProgression
ENSG00000119844 AFTPH NonAssociatedWithProgression
ENSG00000214160 ALG3 o--a
ENSG00000159461 AMFR o-o
ENSG00000213983 AP1G2 ---
ENSG00000106367 AP1S1 ---
ENSG00000042753 AP2S1 o--b
ENSG00000095139 ARCN1 o-o
ENSG00000124198 ARFGEF2 o+o
ENSG00000164144 ARFIP1 o++b
ENSG00000118217 ATF6 o--a
ENSG00000017260 ATP2C1 oo-
ENSG00000152234 ATP5A1 -o-
ENSG00000110955 ATP5B o--b
ENSG00000165629 ATP5C1 NonAssociatedWithProgression
ENSG00000099624 ATP5D o--a
ENSG00000124172 ATP5E NonAssociatedWithProgression
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000154518 ATP5G3 NonAssociatedWithProgression
ENSG00000154723 ATP5J o+o
ENSG00000241837 ATP5O +o+
ENSG00000165240 ATP7A o++b
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000074582 BCS1L o-o
ENSG00000105829 BET1 NonAssociatedWithProgression
ENSG00000113734 BNIP1 o--b
ENSG00000168000 BSCL2 ---
ENSG00000144559 C3orf31 NonAssociatedWithProgression
ENSG00000165806 CASP7 o-o
ENSG00000135404 CD63 o--a
ENSG00000188603 CLN3 o++b
ENSG00000102805 CLN5 NonAssociatedWithProgression
ENSG00000135775 COG2 o--a
ENSG00000129083 COPB1 o+-
ENSG00000184432 COPB2 -+o
ENSG00000105669 COPE o-o
ENSG00000181789 COPG NonAssociatedWithProgression
ENSG00000158623 COPG2 NonAssociatedWithProgression
ENSG00000111481 COPZ1 o--a
ENSG00000102879 CORO1A o--a
ENSG00000014919 COX15 NonAssociatedWithProgression
ENSG00000163626 COX18 o--b
ENSG00000040531 CTNS --o
ENSG00000129562 DAD1 -oo
ENSG00000244038 DDOST o--a
ENSG00000157349 DDX19B NonAssociatedWithProgression
ENSG00000136986 DERL1 NonAssociatedWithProgression
ENSG00000072849 DERL2 o-o
ENSG00000172893 DHCR7 o--b
ENSG00000167130 DOLPP1 NonAssociatedWithProgression
ENSG00000083097 DOPEY1 o-+
ENSG00000000419 DPM1 o+-
ENSG00000136908 DPM2 o--a
ENSG00000179085 DPM3 o-o
ENSG00000145194 ECE2 ---
ENSG00000134109 EDEM1 o--b
ENSG00000132507 EIF5A o--a
ENSG00000197217 ENTPD4 NonAssociatedWithProgression
ENSG00000120616 EPC1 o--b
ENSG00000107566 ERLIN1 o-o
ENSG00000147475 ERLIN2 o+o
ENSG00000151348 EXT2 NonAssociatedWithProgression
ENSG00000214253 FIS1 --o
ENSG00000119392 GLE1 NonAssociatedWithProgression
ENSG00000090863 GLG1 o-+
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000173230 GOLGB1 o--b
ENSG00000051108 HERPUD1 +oo
ENSG00000113161 HMGCR +oo
ENSG00000166598 HSP90B1 NonAssociatedWithProgression
ENSG00000115317 HTRA2 o--a
ENSG00000003147 ICA1 NonAssociatedWithProgression
ENSG00000132305 IMMT NonAssociatedWithProgression
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000054523 KIF1B o++a
ENSG00000114030 KPNA1 NonAssociatedWithProgression
ENSG00000102753 KPNA3 NonAssociatedWithProgression
ENSG00000108424 KPNB1 o--a
ENSG00000163463 KRTCAP2 o-o
ENSG00000126777 KTN1 NonAssociatedWithProgression
ENSG00000005893 LAMP2 o-+
ENSG00000143815 LBR +oo
ENSG00000174106 LEMD3 +-o
ENSG00000074695 LMAN1 o-o
ENSG00000114988 LMAN2L o--b
ENSG00000113368 LMNB1 o--b
ENSG00000118308 LRMP o--a
ENSG00000102158 MAGT1 o-+
ENSG00000140941 MAP1LC3B NonAssociatedWithProgression
ENSG00000168067 MAP4K2 ---
ENSG00000015479 MATR3 -o-
ENSG00000143384 MCL1 o-o
ENSG00000116688 MFN2 o--b
ENSG00000115204 MPV17 --o
ENSG00000115364 MRPL19 NonAssociatedWithProgression
ENSG00000106591 MRPL32 NonAssociatedWithProgression
ENSG00000125459 MSTO1 NonAssociatedWithProgression
ENSG00000128654 MTX2 o++b
ENSG00000141562 NARF NonAssociatedWithProgression
ENSG00000125356 NDUFA1 o+o
ENSG00000186010 NDUFA13 o-o
ENSG00000131495 NDUFA2 o--b
ENSG00000184983 NDUFA6 o++b
ENSG00000139180 NDUFA9 o--a
ENSG00000023228 NDUFS1 o+o
ENSG00000158864 NDUFS2 --o
ENSG00000213619 NDUFS3 NonAssociatedWithProgression
ENSG00000164258 NDUFS4 NonAssociatedWithProgression
ENSG00000115286 NDUFS7 ---
ENSG00000110717 NDUFS8 o--a
ENSG00000167792 NDUFV1 --o
ENSG00000125967 NECAB3 ---
ENSG00000157191 NECAP2 o-o
ENSG00000112992 NNT -+o
ENSG00000111581 NUP107 -+o
ENSG00000069248 NUP133 o+-
ENSG00000124789 NUP153 o+-
ENSG00000030066 NUP160 NonAssociatedWithProgression
ENSG00000126883 NUP214 NonAssociatedWithProgression
ENSG00000093000 NUP50 NonAssociatedWithProgression
ENSG00000138750 NUP54 o-o
ENSG00000213024 NUP62 o--a
ENSG00000108559 NUP88 NonAssociatedWithProgression
ENSG00000110713 NUP98 o--a
ENSG00000102898 NUTF2 --o
ENSG00000132661 NXT1 o--b
ENSG00000105953 OGDH ---
ENSG00000198836 OPA1 o-+
ENSG00000128699 ORMDL1 o++b
ENSG00000155463 OXA1L +o+
ENSG00000160613 PCSK7 o--a
ENSG00000127980 PEX1 +-o
ENSG00000108733 PEX12 o++b
ENSG00000162928 PEX13 o+o
ENSG00000142655 PEX14 o++b
ENSG00000162735 PEX19 --o
ENSG00000034693 PEX3 NonAssociatedWithProgression
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000215021 PHB2 ---
ENSG00000165195 PIGA NonAssociatedWithProgression
ENSG00000069943 PIGB o++b
ENSG00000135845 PIGC oo+
ENSG00000151665 PIGF -+o
ENSG00000142892 PIGK -+o
ENSG00000165282 PIGO ---
ENSG00000087111 PIGS o-o
ENSG00000124155 PIGT o--b
ENSG00000101464 PIGU o--a
ENSG00000060642 PIGV NonAssociatedWithProgression
ENSG00000145337 PIGY o+-
ENSG00000102007 PLP2 o--a
ENSG00000165688 PMPCA o--a
ENSG00000135241 PNPLA8 NonAssociatedWithProgression
ENSG00000130714 POMT1 o++b
ENSG00000143224 PPOX +o+
ENSG00000080815 PSEN1 o-o
ENSG00000101417 PXMP4 o-+
ENSG00000116260 QSOX1 o-+
ENSG00000101146 RAE1 -o-
ENSG00000132155 RAF1 NonAssociatedWithProgression
ENSG00000153201 RANBP2 o+o
ENSG00000100401 RANGAP1 o-o
ENSG00000157916 RER1 -+o
ENSG00000042445 RETSAT oo+
ENSG00000126858 RHOT1 NonAssociatedWithProgression
ENSG00000140983 RHOT2 o--b
ENSG00000163902 RPN1 o-o
ENSG00000118705 RPN2 o--a
ENSG00000115310 RTN4 +oo
ENSG00000136193 SCRN1 --o
ENSG00000073578 SDHA o-o
ENSG00000204370 SDHD NonAssociatedWithProgression
ENSG00000121542 SEC22A -o-
ENSG00000163904 SENP2 o--a
ENSG00000111897 SERINC1 o-+
ENSG00000119899 SLC17A5 +o+
ENSG00000108528 SLC25A11 ---
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000177542 SLC25A22 NonAssociatedWithProgression
ENSG00000169100 SLC25A6 o-o
ENSG00000169359 SLC33A1 o++b
ENSG00000198689 SLC9A6 NonAssociatedWithProgression
ENSG00000114902 SPCS1 o-o
ENSG00000072310 SREBF1 o--a
ENSG00000143742 SRP9 NonAssociatedWithProgression
ENSG00000182934 SRPR o--a
ENSG00000134910 STT3A NonAssociatedWithProgression
ENSG00000163527 STT3B o--a
ENSG00000104915 STX10 o--a
ENSG00000116030 SUMO1 NonAssociatedWithProgression
ENSG00000148290 SURF1 o--a
ENSG00000231925 TAPBP ---
ENSG00000134809 TIMM10 o-o
ENSG00000099800 TIMM13 o--a
ENSG00000134375 TIMM17A -oo
ENSG00000126768 TIMM17B --o
ENSG00000138297 TIMM23 o--a
ENSG00000105197 TIMM50 ---
ENSG00000150779 TIMM8B --o
ENSG00000100575 TIMM9 -+o
ENSG00000170348 TMED10 --o
ENSG00000086598 TMED2 +o+
ENSG00000058804 TMEM48 NonAssociatedWithProgression
ENSG00000160183 TMPRSS3 NonAssociatedWithProgression
ENSG00000100216 TOMM22 o--b
ENSG00000025772 TOMM34 o--a
ENSG00000047410 TPR o+-
ENSG00000113595 TRIM23 o++b
ENSG00000204713 TRIM27 o--a
ENSG00000160803 UBQLN4 o--a
ENSG00000175564 UCP3 NonAssociatedWithProgression
ENSG00000156467 UQCRB o++b
ENSG00000010256 UQCRC1 o--a
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000138768 USO1 NonAssociatedWithProgression
ENSG00000117533 VAMP4 o+-
ENSG00000124164 VAPB NonAssociatedWithProgression
ENSG00000213585 VDAC1 --o
ENSG00000165637 VDAC2 -o-
ENSG00000078668 VDAC3 -+o
ENSG00000146457 WTAP o-o
ENSG00000130227 XPO7 o--b