PEACHi
GeneSet KEGG_ENDOCYTOSIS (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -3.6 0.01614 88.0 22.0 10.77
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000072818 ACAP1 o--a
ENSG00000114331 ACAP2 o++b
ENSG00000131584 ACAP3 ---
ENSG00000173020 ADRBK1 o--b
ENSG00000100077 ADRBK2 o--b
ENSG00000135439 AGAP2 NonAssociatedWithProgression
ENSG00000196961 AP2A1 ---
ENSG00000006125 AP2B1 ---
ENSG00000161203 AP2M1 ---
ENSG00000042753 AP2S1 o--b
ENSG00000186635 ARAP1 ---
ENSG00000047365 ARAP2 o++b
ENSG00000165527 ARF6 NonAssociatedWithProgression
ENSG00000149182 ARFGAP2 ---
ENSG00000242247 ARFGAP3 ---
ENSG00000141480 ARRB2 ---
ENSG00000153317 ASAP1 o++b
ENSG00000110395 CBL o--b
ENSG00000114423 CBLB +oo
ENSG00000070831 CDC42 +oo
ENSG00000130724 CHMP2A o--a
ENSG00000083937 CHMP2B o+-
ENSG00000101421 CHMP4B o--b
ENSG00000086065 CHMP5 o++b
ENSG00000176108 CHMP6 o--a
ENSG00000122705 CLTA +-o
ENSG00000175416 CLTB ---
ENSG00000141367 CLTC -o-
ENSG00000121966 CXCR4 o--b
ENSG00000153071 DAB2 -o-
ENSG00000116675 DNAJC6 o++a
ENSG00000106976 DNM1 --o
ENSG00000087470 DNM1L NonAssociatedWithProgression
ENSG00000079805 DNM2 o--a
ENSG00000197959 DNM3 o++b
ENSG00000102189 EEA1 NonAssociatedWithProgression
ENSG00000110047 EHD1 ---
ENSG00000063245 EPN1 ---
ENSG00000085832 EPS15 +-o
ENSG00000141971 FAM125A ---
ENSG00000196814 FAM125B o--a
ENSG00000108262 GIT1 -o-
ENSG00000139436 GIT2 NonAssociatedWithProgression
ENSG00000125388 GRK4 -+o
ENSG00000198873 GRK5 +oo
ENSG00000198055 GRK6 ---
ENSG00000185359 HGS o--b
ENSG00000206503 HLA-A +-o
ENSG00000234745 HLA-B o-+
ENSG00000204525 HLA-C o-+
ENSG00000204592 HLA-E +-o
ENSG00000174775 HRAS o--b
ENSG00000204389 HSPA1A o--b
ENSG00000204388 HSPA1B o--b
ENSG00000173110 HSPA6 NonAssociatedWithProgression
ENSG00000109971 HSPA8 ---
ENSG00000140443 IGF1R o++b
ENSG00000147168 IL2RG o-o
ENSG00000144711 IQSEC1 NonAssociatedWithProgression
ENSG00000078747 ITCH o++b
ENSG00000135679 MDM2 -o-
ENSG00000069869 NEDD4 -+o
ENSG00000148498 PARD3 NonAssociatedWithProgression
ENSG00000102981 PARD6A --o
ENSG00000124171 PARD6B -+o
ENSG00000115020 PIKFYVE o++b
ENSG00000141720 PIP4K2B NonAssociatedWithProgression
ENSG00000143398 PIP5K1A o-+
ENSG00000186111 PIP5K1C ---
ENSG00000163558 PRKCI -+o
ENSG00000067606 PRKCZ ---
ENSG00000146005 PSD2 NonAssociatedWithProgression
ENSG00000125637 PSD4 ---
ENSG00000103769 RAB11A -o-
ENSG00000185236 RAB11B ---
ENSG00000156675 RAB11FIP1 o--b
ENSG00000107560 RAB11FIP2 NonAssociatedWithProgression
ENSG00000090565 RAB11FIP3 o--a
ENSG00000124209 RAB22A o+-
ENSG00000144566 RAB5A NonAssociatedWithProgression
ENSG00000111540 RAB5B o--b
ENSG00000108774 RAB5C NonAssociatedWithProgression
ENSG00000029725 RABEP1 NonAssociatedWithProgression
ENSG00000181852 RNF41 o-o
ENSG00000176783 RUFY1 --o
ENSG00000141985 SH3GL1 o-o
ENSG00000140600 SH3GL3 NonAssociatedWithProgression
ENSG00000097033 SH3GLB1 o+o
ENSG00000148341 SH3GLB2 ---
ENSG00000147010 SH3KBP1 +o+
ENSG00000112305 SMAP1 NonAssociatedWithProgression
ENSG00000084070 SMAP2 NonAssociatedWithProgression
ENSG00000159210 SNF8 o--a
ENSG00000136738 STAM NonAssociatedWithProgression
ENSG00000115145 STAM2 o+o
ENSG00000124356 STAMBP o--b
ENSG00000072274 TFRC o++a
ENSG00000175104 TRAF6 NonAssociatedWithProgression
ENSG00000074319 TSG101 NonAssociatedWithProgression
ENSG00000138592 USP8 o+-
ENSG00000115561 VPS24 NonAssociatedWithProgression
ENSG00000131475 VPS25 ---
ENSG00000160948 VPS28 o-o
ENSG00000136100 VPS36 ---
ENSG00000155975 VPS37A +o+
ENSG00000139722 VPS37B o--b
ENSG00000136631 VPS45 o++b
ENSG00000132612 VPS4A ---
ENSG00000119541 VPS4B NonAssociatedWithProgression
ENSG00000009844 VTA1 NonAssociatedWithProgression
ENSG00000123124 WWP1 -o-
ENSG00000131381 ZFYVE20 NonAssociatedWithProgression