PEACHi
GeneSet INTRACELLULAR_NON_MEMBRANE_BOUND_ORGANELLE (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -4.7 0.00173 324.0 71.0 44.76
DownRegulated -6.5 1.0E-5 324.0 233.0 191.33
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000097007 ABL1 o--a
ENSG00000099204 ABLIM1 -oo
ENSG00000163995 ABLIM2 NonAssociatedWithProgression
ENSG00000102977 ACD o+-
ENSG00000075624 ACTB o--b
ENSG00000184009 ACTG1 ---
ENSG00000138107 ACTR1A ---
ENSG00000115073 ACTR1B ---
ENSG00000138071 ACTR2 o+o
ENSG00000115091 ACTR3 o+-
ENSG00000127914 AKAP9 NonAssociatedWithProgression
ENSG00000116127 ALMS1 NonAssociatedWithProgression
ENSG00000003393 ALS2 o++b
ENSG00000126016 AMOT NonAssociatedWithProgression
ENSG00000214274 ANG o++b
ENSG00000011426 ANLN NonAssociatedWithProgression
ENSG00000135046 ANXA1 o+-
ENSG00000134982 APC NonAssociatedWithProgression
ENSG00000100823 APEX1 NonAssociatedWithProgression
ENSG00000062725 APPBP2 o-o
ENSG00000137074 APTX NonAssociatedWithProgression
ENSG00000141522 ARHGDIA ---
ENSG00000111348 ARHGDIB o--b
ENSG00000116584 ARHGEF2 o--b
ENSG00000143862 ARL8A o-+
ENSG00000134108 ARL8B +oo
ENSG00000241685 ARPC1A o+o
ENSG00000130429 ARPC1B -+o
ENSG00000163466 ARPC2 -o-
ENSG00000111229 ARPC3 NonAssociatedWithProgression
ENSG00000241553 ARPC4 o--b
ENSG00000162704 ARPC5 o--b
ENSG00000198356 ASNA1 o--b
ENSG00000101844 ATG4A o++a
ENSG00000168397 ATG4B o--b
ENSG00000125703 ATG4C o++b
ENSG00000130734 ATG4D o--b
ENSG00000085224 ATRX -oo
ENSG00000087586 AURKA +-o
ENSG00000141577 AZI1 ---
ENSG00000140463 BBS4 o--b
ENSG00000113916 BCL6 +-o
ENSG00000136717 BIN1 --o
ENSG00000089685 BIRC5 ---
ENSG00000104081 BMF +-o
ENSG00000169679 BUB1 -o-
ENSG00000156970 BUB1B +oo
ENSG00000154473 BUB3 o--a
ENSG00000134152 C15orf29 NonAssociatedWithProgression
ENSG00000124074 C16orf48 o--a
ENSG00000116489 CAPZA1 NonAssociatedWithProgression
ENSG00000198898 CAPZA2 -o-
ENSG00000077549 CAPZB o--b
ENSG00000147044 CASK o++b
ENSG00000064012 CASP8 +-o
ENSG00000108468 CBX1 o++a
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000157456 CCNB2 oo-
ENSG00000163468 CCT3 NonAssociatedWithProgression
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000130177 CDC16 NonAssociatedWithProgression
ENSG00000004897 CDC27 NonAssociatedWithProgression
ENSG00000163171 CDC42EP3 NonAssociatedWithProgression
ENSG00000146670 CDCA5 o--b
ENSG00000136861 CDK5RAP2 o-o
ENSG00000168564 CDKN2AIP NonAssociatedWithProgression
ENSG00000115163 CENPA o-o
ENSG00000145241 CENPC1 NonAssociatedWithProgression
ENSG00000138778 CENPE NonAssociatedWithProgression
ENSG00000117724 CENPF o--a
ENSG00000119397 CEP110 +o+
ENSG00000126001 CEP250 o-o
ENSG00000198707 CEP290 -oo
ENSG00000166037 CEP57 NonAssociatedWithProgression
ENSG00000182923 CEP63 NonAssociatedWithProgression
ENSG00000153140 CETN3 oo+
ENSG00000149554 CHEK1 o+o
ENSG00000131165 CHMP1A o--a
ENSG00000141076 CIRH1A NonAssociatedWithProgression
ENSG00000175216 CKAP5 NonAssociatedWithProgression
ENSG00000074054 CLASP1 NonAssociatedWithProgression
ENSG00000163539 CLASP2 +oo
ENSG00000169504 CLIC4 +oo
ENSG00000130779 CLIP1 o+o
ENSG00000064666 CNN2 o--b
ENSG00000170037 CNTROB o-o
ENSG00000121058 COIL +-o
ENSG00000102879 CORO1A o--a
ENSG00000110880 CORO1C +oo
ENSG00000058453 CROCC --o
ENSG00000168036 CTNNB1 o--b
ENSG00000085733 CTTN o--b
ENSG00000173402 DAG1 o--a
ENSG00000196730 DAPK1 o++a
ENSG00000204843 DCTN1 ---
ENSG00000175203 DCTN2 --o
ENSG00000132912 DCTN4 NonAssociatedWithProgression
ENSG00000013573 DDX11 o--a
ENSG00000064703 DDX20 NonAssociatedWithProgression
ENSG00000165732 DDX21 -o-
ENSG00000089737 DDX24 NonAssociatedWithProgression
ENSG00000213782 DDX47 o-o
ENSG00000136271 DDX56 o--b
ENSG00000158796 DEDD -o-
ENSG00000160570 DEDD2 o--a
ENSG00000130826 DKC1 o--b
ENSG00000132535 DLG4 ---
ENSG00000128590 DNAJB9 o--b
ENSG00000119772 DNMT3A o-o
ENSG00000149636 DSN1 NonAssociatedWithProgression
ENSG00000096696 DSP NonAssociatedWithProgression
ENSG00000158560 DYNC1I1 o++a
ENSG00000135720 DYNC1LI2 NonAssociatedWithProgression
ENSG00000088986 DYNLL1 --o
ENSG00000121083 DYNLL2 NonAssociatedWithProgression
ENSG00000134014 ELP3 o+o
ENSG00000125746 EML2 ---
ENSG00000159023 EPB41 -o-
ENSG00000079819 EPB41L2 o-o
ENSG00000095203 EPB41L4B -oo
ENSG00000175595 ERCC4 o-o
ENSG00000135476 ESPL1 o-+
ENSG00000171311 EXOSC1 NonAssociatedWithProgression
ENSG00000171824 EXOSC10 NonAssociatedWithProgression
ENSG00000123737 EXOSC9 o--b
ENSG00000092820 EZR NonAssociatedWithProgression
ENSG00000105058 FAM32A o--b
ENSG00000149806 FAU o-o
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000196924 FLNA ---
ENSG00000136068 FLNB NonAssociatedWithProgression
ENSG00000102081 FMR1 o+-
ENSG00000114416 FXR1 ---
ENSG00000082074 FYB o--a
ENSG00000034713 GABARAPL2 -+o
ENSG00000141013 GAS8 NonAssociatedWithProgression
ENSG00000163938 GNL3 o--b
ENSG00000196277 GRM7 NonAssociatedWithProgression
ENSG00000113648 H2AFY NonAssociatedWithProgression
ENSG00000094631 HDAC6 o--a
ENSG00000147099 HDAC8 oo-
ENSG00000119969 HELLS +o+
ENSG00000169567 HINT1 NonAssociatedWithProgression
ENSG00000189403 HMGB1 o--b
ENSG00000164104 HMGB2 o--b
ENSG00000205581 HMGN1 o+o
ENSG00000106211 HSPB1 o--b
ENSG00000163565 IFI16 o--a
ENSG00000070061 IKBKAP NonAssociatedWithProgression
ENSG00000143621 ILF2 o-o
ENSG00000177971 IMP3 o--a
ENSG00000136718 IMP4 o--b
ENSG00000168556 ING2 NonAssociatedWithProgression
ENSG00000140575 IQGAP1 NonAssociatedWithProgression
ENSG00000177606 JUN NonAssociatedWithProgression
ENSG00000171223 JUNB ---
ENSG00000130522 JUND o--b
ENSG00000186625 KATNA1 NonAssociatedWithProgression
ENSG00000140854 KATNB1 o--b
ENSG00000136813 KIAA0368 o+-
ENSG00000138160 KIF11 o+-
ENSG00000163808 KIF15 NonAssociatedWithProgression
ENSG00000054523 KIF1B o++a
ENSG00000079616 KIF22 o--b
ENSG00000137807 KIF23 o--a
ENSG00000142945 KIF2C o--b
ENSG00000101350 KIF3B o--a
ENSG00000084731 KIF3C ---
ENSG00000090889 KIF4A NonAssociatedWithProgression
ENSG00000170759 KIF5B NonAssociatedWithProgression
ENSG00000168280 KIF5C +o+
ENSG00000075945 KIFAP3 NonAssociatedWithProgression
ENSG00000124702 KLHDC3 o--a
ENSG00000109466 KLHL2 o++b
ENSG00000076321 KLHL20 o++b
ENSG00000122550 KLHL7 o+o
ENSG00000184445 KNTC1 o+o
ENSG00000118162 KPTN ---
ENSG00000111615 KRR1 o--b
ENSG00000002834 LASP1 o--b
ENSG00000150457 LATS2 o++a
ENSG00000182866 LCK o-o
ENSG00000174405 LIG4 -+o
ENSG00000050405 LIMA1 -+o
ENSG00000131899 LLGL1 o--a
ENSG00000113368 LMNB1 o--b
ENSG00000138095 LRPPRC NonAssociatedWithProgression
ENSG00000145220 LYAR o--b
ENSG00000143669 LYST oo-
ENSG00000164109 MAD2L1 NonAssociatedWithProgression
ENSG00000166963 MAP1A o--b
ENSG00000130479 MAP1S o--a
ENSG00000173327 MAP3K11 ---
ENSG00000047849 MAP4 o-+
ENSG00000101367 MAPRE1 o--b
ENSG00000186868 MAPT o++a
ENSG00000155130 MARCKS +-o
ENSG00000007047 MARK4 ---
ENSG00000073111 MCM2 o--a
ENSG00000166508 MCM7 o--b
ENSG00000135679 MDM2 -o-
ENSG00000167842 MIS12 o+o
ENSG00000155438 MKI67IP NonAssociatedWithProgression
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000124383 MPHOSPH10 o--b
ENSG00000149573 MPZL2 o++a
ENSG00000159111 MRPL10 o--a
ENSG00000183093 MRPL12 ---
ENSG00000214026 MRPL23 ---
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000182154 MRPL41 ---
ENSG00000198015 MRPL42 o--a
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000172590 MRPL52 oo+
ENSG00000162910 MRPL55 o--a
ENSG00000048544 MRPS10 -o-
ENSG00000181991 MRPS11 o--a
ENSG00000128626 MRPS12 o--a
ENSG00000116898 MRPS15 o--b
ENSG00000182180 MRPS16 --o
ENSG00000096080 MRPS18A NonAssociatedWithProgression
ENSG00000163319 MRPS18C NonAssociatedWithProgression
ENSG00000175110 MRPS22 o--a
ENSG00000062582 MRPS24 o--a
ENSG00000147586 MRPS28 o+o
ENSG00000061794 MRPS35 o--a
ENSG00000134056 MRPS36 -+o
ENSG00000147065 MSN NonAssociatedWithProgression
ENSG00000132382 MYBBP1A o--b
ENSG00000133026 MYH10 o--a
ENSG00000100345 MYH9 -o-
ENSG00000092841 MYL6 o-o
ENSG00000133454 MYO18B -o-
ENSG00000197879 MYO1C ---
ENSG00000099331 MYO9B oo+
ENSG00000141562 NARF NonAssociatedWithProgression
ENSG00000115053 NCL o--b
ENSG00000080986 NDC80 o++b
ENSG00000072864 NDE1 --o
ENSG00000111859 NEDD9 NonAssociatedWithProgression
ENSG00000117650 NEK2 o--b
ENSG00000186575 NF2 o--b
ENSG00000100138 NHP2L1 NonAssociatedWithProgression
ENSG00000100503 NIN oo+
ENSG00000184967 NOC4L o--a
ENSG00000140939 NOL3 --o
ENSG00000165271 NOL6 o--b
ENSG00000198000 NOL8 -oo
ENSG00000166197 NOLC1 o--b
ENSG00000146909 NOM1 o--b
ENSG00000181163 NPM1 o--b
ENSG00000117697 NSL1 o+-
ENSG00000037474 NSUN2 o--a
ENSG00000167005 NUDT21 NonAssociatedWithProgression
ENSG00000083635 NUFIP1 NonAssociatedWithProgression
ENSG00000108256 NUFIP2 --o
ENSG00000137497 NUMA1 o--b
ENSG00000104147 OIP5 -oo
ENSG00000007168 PAFAH1B1 o+-
ENSG00000129116 PALLD NonAssociatedWithProgression
ENSG00000145730 PAM oo+
ENSG00000143799 PARP1 o--b
ENSG00000138964 PARVG o--a
ENSG00000180628 PCGF5 NonAssociatedWithProgression
ENSG00000078674 PCM1 o--a
ENSG00000132646 PCNA -o-
ENSG00000163110 PDLIM5 -+o
ENSG00000140451 PIF1 ---
ENSG00000118762 PKD2 oo+
ENSG00000081277 PKP1 NonAssociatedWithProgression
ENSG00000166851 PLK1 o--a
ENSG00000160783 PMF1 o-o
ENSG00000140464 PML o-o
ENSG00000176903 PNMA1 +oo
ENSG00000100941 PNN oo-
ENSG00000115946 PNO1 -o-
ENSG00000101868 POLA1 NonAssociatedWithProgression
ENSG00000070501 POLB o+-
ENSG00000136480 POLG2 NonAssociatedWithProgression
ENSG00000137054 POLR1E o--b
ENSG00000181222 POLR2A ---
ENSG00000104356 POP1 o+o
ENSG00000172336 POP7 o--a
ENSG00000163605 PPP4R2 o-o
ENSG00000198901 PRC1 +-o
ENSG00000080815 PSEN1 o-o
ENSG00000011304 PTBP1 ---
ENSG00000185129 PURA ---
ENSG00000146676 PURB o--a
ENSG00000011454 RABGAP1 o--a
ENSG00000051180 RAD51 NonAssociatedWithProgression
ENSG00000101146 RAE1 -o-
ENSG00000132341 RAN o--b
ENSG00000010017 RANBP9 +o+
ENSG00000139687 RB1 NonAssociatedWithProgression
ENSG00000168214 RBPJ o--b
ENSG00000180198 RCC1 o--a
ENSG00000214022 REPIN1 o--a
ENSG00000148300 REXO4 o--b
ENSG00000035928 RFC1 o--b
ENSG00000049541 RFC2 o--b
ENSG00000133119 RFC3 -oo
ENSG00000163918 RFC4 o--a
ENSG00000111445 RFC5 -oo
ENSG00000034677 RNF19A o-o
ENSG00000117748 RPA2 oo-
ENSG00000106399 RPA3 o++b
ENSG00000103494 RPGRIP1L NonAssociatedWithProgression
ENSG00000142676 RPL11 o--b
ENSG00000142541 RPL13A NonAssociatedWithProgression
ENSG00000174748 RPL15 o--a
ENSG00000131469 RPL27 NonAssociatedWithProgression
ENSG00000100316 RPL3 -o-
ENSG00000136942 RPL35 o--b
ENSG00000130255 RPL36 o-o
ENSG00000148303 RPL7A -o-
ENSG00000163682 RPL9 NonAssociatedWithProgression
ENSG00000148688 RPP30 NonAssociatedWithProgression
ENSG00000152464 RPP38 o+o
ENSG00000124787 RPP40 NonAssociatedWithProgression
ENSG00000142534 RPS11 o--a
ENSG00000105372 RPS19 -o-
ENSG00000198034 RPS4X NonAssociatedWithProgression
ENSG00000171863 RPS7 o--a
ENSG00000125844 RRBP1 ---
ENSG00000160214 RRP1 ---
ENSG00000168061 SAC3D1 NonAssociatedWithProgression
ENSG00000156876 SASS6 o++b
ENSG00000198301 SDAD1 o--a
ENSG00000138758 SEPT11 o++a
ENSG00000122545 SEPT7 NonAssociatedWithProgression
ENSG00000184640 SEPT9 o--b
ENSG00000120742 SERP1 --o
ENSG00000164403 SHROOM1 --o
ENSG00000146950 SHROOM2 o++b
ENSG00000068903 SIRT2 --o
ENSG00000174669 SLC29A2 ---
ENSG00000014824 SLC30A9 NonAssociatedWithProgression
ENSG00000109062 SLC9A3R1 o--a
ENSG00000073584 SMARCE1 -oo
ENSG00000072501 SMC1A o--a
ENSG00000136824 SMC2 -+o
ENSG00000108055 SMC3 NonAssociatedWithProgression
ENSG00000113810 SMC4 o+-
ENSG00000183963 SMTN ---
ENSG00000123415 SMUG1 NonAssociatedWithProgression
ENSG00000197694 SPTAN1 NonAssociatedWithProgression
ENSG00000115306 SPTBN1 oo-
ENSG00000160460 SPTBN4 NonAssociatedWithProgression
ENSG00000167881 SRP68 o-+
ENSG00000066923 STAG3 o--b
ENSG00000124214 STAU1 NonAssociatedWithProgression
ENSG00000211455 STK38L NonAssociatedWithProgression
ENSG00000165283 STOML2 ---
ENSG00000165416 SUGT1 -+o
ENSG00000184900 SUMO3 o--a
ENSG00000148296 SURF6 NonAssociatedWithProgression
ENSG00000101945 SUV39H1 o--a
ENSG00000161860 SYCE2 o--a
ENSG00000148835 TAF5 o--a
ENSG00000124659 TBCC o--a
ENSG00000141556 TBCD o--b
ENSG00000116957 TBCE o--a
ENSG00000139437 TCHP NonAssociatedWithProgression
ENSG00000070814 TCOF1 o--b
ENSG00000132604 TERF2 o--a
ENSG00000166848 TERF2IP o--b
ENSG00000173451 THAP2 -+o
ENSG00000092330 TINF2 o--b
ENSG00000075131 TIPIN NonAssociatedWithProgression
ENSG00000120802 TMPO -o-
ENSG00000173273 TNKS o--a
ENSG00000198900 TOP1 o+o
ENSG00000131747 TOP2A o--b
ENSG00000077097 TOP2B o+o
ENSG00000141510 TP53 o--a
ENSG00000140416 TPM1 oo+
ENSG00000198467 TPM2 ---
ENSG00000143549 TPM3 oo-
ENSG00000133112 TPT1 oo-
ENSG00000088325 TPX2 o--b
ENSG00000165699 TSC1 NonAssociatedWithProgression
ENSG00000106477 TSGA14 -+o
ENSG00000184205 TSPYL2 o--b
ENSG00000112742 TTK o--b
ENSG00000196230 TUBB o--a
ENSG00000188229 TUBB2C o--b
ENSG00000127589 TUBB4Q o--a
ENSG00000108423 TUBD1 o++b
ENSG00000074935 TUBE1 o+o
ENSG00000131462 TUBG1 --o
ENSG00000126216 TUBGCP3 o-o
ENSG00000153575 TUBGCP5 o-o
ENSG00000128159 TUBGCP6 o--a
ENSG00000151239 TWF1 o++b
ENSG00000103275 UBE2I o--a
ENSG00000108312 UBTF o--a
ENSG00000005007 UPF1 o--b
ENSG00000011260 UTP18 NonAssociatedWithProgression
ENSG00000120800 UTP20 NonAssociatedWithProgression
ENSG00000132467 UTP3 o++b
ENSG00000152818 UTRN -+o
ENSG00000136059 VILL o--a
ENSG00000026025 VIM o--b
ENSG00000015285 WAS o--b
ENSG00000112290 WASF1 NonAssociatedWithProgression
ENSG00000158195 WASF2 NonAssociatedWithProgression
ENSG00000106299 WASL o+o
ENSG00000115935 WIPF1 -+o
ENSG00000165392 WRN +oo
ENSG00000152422 XRCC4 o++a
ENSG00000088930 XRN2 NonAssociatedWithProgression
ENSG00000214717 ZBED1 ---
ENSG00000122515 ZMIZ2 o--b
ENSG00000179456 ZNF238 o-o
ENSG00000109917 ZNF259 o--b
ENSG00000171606 ZNF274 o--a
ENSG00000109445 ZNF330 o++b
ENSG00000113761 ZNF346 -o-
ENSG00000081665 ZNF506 NonAssociatedWithProgression
ENSG00000086827 ZW10 NonAssociatedWithProgression
ENSG00000174442 ZWILCH NonAssociatedWithProgression
ENSG00000122952 ZWINT o-o