PEACHi
GeneSet GTTTGTT,MIR-495 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -5.0 0.01046 94.0 9.0 1.79
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000132142 ACACA o--b
ENSG00000138107 ACTR1A ---
ENSG00000153107 ANAPC1 o--a
ENSG00000118454 ANKRD13C oo-
ENSG00000166747 AP1G1 o+-
ENSG00000185009 AP3M1 o--a
ENSG00000062725 APPBP2 o-o
ENSG00000100852 ARHGAP5 o++b
ENSG00000114098 ARMC8 NonAssociatedWithProgression
ENSG00000183475 ASB7 NonAssociatedWithProgression
ENSG00000157087 ATP2B2 o++b
ENSG00000088812 ATRN NonAssociatedWithProgression
ENSG00000175866 BAIAP2 NonAssociatedWithProgression
ENSG00000204469 BAT2 ---
ENSG00000119866 BCL11A ---
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000119636 C14orf45 +oo
ENSG00000152242 C18orf25 o--a
ENSG00000149639 C20orf117 NonAssociatedWithProgression
ENSG00000164970 C9orf25 NonAssociatedWithProgression
ENSG00000148660 CAMK2G o+o
ENSG00000116489 CAPZA1 NonAssociatedWithProgression
ENSG00000078699 CBFA2T2 o--a
ENSG00000110395 CBL o--b
ENSG00000141582 CBX4 o+-
ENSG00000135535 CD164 oo-
ENSG00000105810 CDK6 o--a
ENSG00000153046 CDYL o--a
ENSG00000107864 CPEB3 o++b
ENSG00000111605 CPSF6 NonAssociatedWithProgression
ENSG00000213923 CSNK1E o--b
ENSG00000176102 CSTF3 NonAssociatedWithProgression
ENSG00000173402 DAG1 o--a
ENSG00000118655 DCLRE1B o++b
ENSG00000168209 DDIT4 o+-
ENSG00000215301 DDX3X oo-
ENSG00000067048 DDX3Y NonAssociatedWithProgression
ENSG00000158796 DEDD -o-
ENSG00000108406 DHX40 oo-
ENSG00000135392 DNAJC14 o++b
ENSG00000139318 DUSP6 NonAssociatedWithProgression
ENSG00000135720 DYNC1LI2 NonAssociatedWithProgression
ENSG00000157540 DYRK1A NonAssociatedWithProgression
ENSG00000066044 ELAVL1 NonAssociatedWithProgression
ENSG00000143924 EML4 oo-
ENSG00000095203 EPB41L4B -oo
ENSG00000135999 EPC2 oo-
ENSG00000134954 ETS1 NonAssociatedWithProgression
ENSG00000096060 FKBP5 o--b
ENSG00000106415 GLCCI1 o-o
ENSG00000197045 GMFB +-o
ENSG00000196277 GRM7 NonAssociatedWithProgression
ENSG00000113070 HBEGF o++a
ENSG00000163349 HIPK1 NonAssociatedWithProgression
ENSG00000152413 HOMER1 o--b
ENSG00000119471 HSDL2 -+o
ENSG00000129351 ILF3 -o-
ENSG00000136381 IREB2 o--b
ENSG00000100221 JOSD1 o-o
ENSG00000177606 JUN NonAssociatedWithProgression
ENSG00000131149 KIAA0182 o--b
ENSG00000159658 KIAA0494 NonAssociatedWithProgression
ENSG00000169330 KIAA1024 NonAssociatedWithProgression
ENSG00000136051 KIAA1033 NonAssociatedWithProgression
ENSG00000169926 KLF13 oo-
ENSG00000102554 KLF5 o-+
ENSG00000069956 MAPK6 o+-
ENSG00000136536 MARCH7 NonAssociatedWithProgression
ENSG00000155130 MARCKS +-o
ENSG00000075413 MARK3 NonAssociatedWithProgression
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000111554 MDM1 o++a
ENSG00000168282 MGAT2 o--b
ENSG00000185787 MORF4L1 NonAssociatedWithProgression
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000084676 NCOA1 NonAssociatedWithProgression
ENSG00000102908 NFAT5 o--b
ENSG00000186416 NKRF o--b
ENSG00000108256 NUFIP2 --o
ENSG00000147162 OGT o-o
ENSG00000172239 PAIP1 o--b
ENSG00000114209 PDCD10 NonAssociatedWithProgression
ENSG00000197329 PELI1 NonAssociatedWithProgression
ENSG00000132326 PER2 +-o
ENSG00000156531 PHF6 o++a
ENSG00000100941 PNN oo-
ENSG00000138814 PPP3CA o++b
ENSG00000119414 PPP6C o--b
ENSG00000183943 PRKX o--b
ENSG00000131188 PRR7 ---
ENSG00000131467 PSME3 o-o
ENSG00000099901 RANBP1 NonAssociatedWithProgression
ENSG00000164327 RICTOR o--b
ENSG00000117000 RLF o-o
ENSG00000198963 RORB NonAssociatedWithProgression
ENSG00000081019 RSBN1 o-o
ENSG00000020633 RUNX3 o--b
ENSG00000182568 SATB1 o--a
ENSG00000099194 SCD +-o
ENSG00000196876 SCN8A -+o
ENSG00000122545 SEPT7 NonAssociatedWithProgression
ENSG00000102100 SLC35A2 o-+
ENSG00000134294 SLC38A2 oo-
ENSG00000125835 SNRPB o--a
ENSG00000167088 SNRPD1 o--a
ENSG00000185591 SP1 o--a
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000021574 SPAST NonAssociatedWithProgression
ENSG00000124783 SSR1 -+o
ENSG00000117155 SSX2IP -o-
ENSG00000101972 STAG2 o--b
ENSG00000115808 STRN o+o
ENSG00000092201 SUPT16H o--a
ENSG00000120948 TARDBP o--a
ENSG00000035862 TIMP2 NonAssociatedWithProgression
ENSG00000170348 TMED10 --o
ENSG00000184840 TMED9 NonAssociatedWithProgression
ENSG00000146072 TNFRSF21 o--a
ENSG00000090905 TNRC6A +-o
ENSG00000157514 TSC22D3 +-o
ENSG00000160714 UBE2Q1 o--a
ENSG00000159202 UBE2Z o-+
ENSG00000114062 UBE3A NonAssociatedWithProgression
ENSG00000118900 UBN1 o--b
ENSG00000170832 USP32 NonAssociatedWithProgression
ENSG00000175073 VCPIP1 NonAssociatedWithProgression
ENSG00000165637 VDAC2 -o-
ENSG00000048707 VPS13D ---
ENSG00000142784 WDTC1 -o-
ENSG00000185728 YTHDF3 o--b
ENSG00000156639 ZFAND3 o--b
ENSG00000005889 ZFX o--b
ENSG00000179456 ZNF238 o-o
ENSG00000165655 ZNF503 -+o