PEACHi
GeneSet GTGACGY_V$E4F1_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.5 0.03098 224.0 156.0 132.28
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000127837 AAMP o--a
ENSG00000137845 ADAM10 NonAssociatedWithProgression
ENSG00000159346 ADIPOR1 NonAssociatedWithProgression
ENSG00000101126 ADNP NonAssociatedWithProgression
ENSG00000204310 AGPAT1 o--b
ENSG00000123505 AMD1 o--a
ENSG00000145362 ANK2 +oo
ENSG00000132466 ANKRD17 ---
ENSG00000138279 ANXA7 -+o
ENSG00000168374 ARF4 o+o
ENSG00000081181 ARG2 NonAssociatedWithProgression
ENSG00000166233 ARIH1 o--a
ENSG00000213465 ARL2 o--a
ENSG00000123268 ATF1 o--b
ENSG00000182220 ATP6AP2 -+o
ENSG00000185883 ATP6V0C o--b
ENSG00000159720 ATP6V0D1 o--a
ENSG00000114573 ATP6V1A NonAssociatedWithProgression
ENSG00000163930 BAP1 o--b
ENSG00000119866 BCL11A ---
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000153094 BCL2L11 NonAssociatedWithProgression
ENSG00000074582 BCS1L o-o
ENSG00000126581 BECN1 oo+
ENSG00000133169 BEX1 NonAssociatedWithProgression
ENSG00000157764 BRAF oo-
ENSG00000095564 BTAF1 NonAssociatedWithProgression
ENSG00000165813 C10orf118 o+o
ENSG00000166024 C10orf28 NonAssociatedWithProgression
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000100744 C14orf129 o++b
ENSG00000100483 C14orf138 NonAssociatedWithProgression
ENSG00000119669 C14orf4 NonAssociatedWithProgression
ENSG00000141741 C17orf37 o-o
ENSG00000143793 C1orf35 o--a
ENSG00000094975 C1orf9 NonAssociatedWithProgression
ENSG00000196227 C20orf177 o++b
ENSG00000115649 C2orf24 o--b
ENSG00000196821 C6orf106 o--a
ENSG00000112308 C6orf62 o-o
ENSG00000135185 C7orf23 NonAssociatedWithProgression
ENSG00000120159 C9orf82 NonAssociatedWithProgression
ENSG00000143933 CALM2 o--a
ENSG00000147044 CASK o++b
ENSG00000141570 CBX8 ---
ENSG00000171097 CCBL1 NonAssociatedWithProgression
ENSG00000118816 CCNI o--a
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000176386 CDC26 NonAssociatedWithProgression
ENSG00000124762 CDKN1A oo-
ENSG00000123989 CHPF ---
ENSG00000213341 CHUK NonAssociatedWithProgression
ENSG00000144021 CIAO1 -+o
ENSG00000139182 CLSTN3 NonAssociatedWithProgression
ENSG00000188153 COL4A5 -oo
ENSG00000118260 CREB1 o+-
ENSG00000163703 CRELD1 --o
ENSG00000121671 CRY2 o--a
ENSG00000176102 CSTF3 NonAssociatedWithProgression
ENSG00000102974 CTCF o--b
ENSG00000144579 CTDSP1 o--a
ENSG00000166266 CUL5 o--b
ENSG00000154639 CXADR NonAssociatedWithProgression
ENSG00000215301 DDX3X oo-
ENSG00000067048 DDX3Y NonAssociatedWithProgression
ENSG00000107625 DDX50 NonAssociatedWithProgression
ENSG00000110367 DDX6 o--b
ENSG00000067248 DHX29 o+o
ENSG00000174953 DHX36 NonAssociatedWithProgression
ENSG00000184047 DIABLO o--a
ENSG00000119689 DLST o--a
ENSG00000135164 DMTF1 NonAssociatedWithProgression
ENSG00000086061 DNAJA1 ---
ENSG00000162616 DNAJB4 o++b
ENSG00000213551 DNAJC9 NonAssociatedWithProgression
ENSG00000101457 DNTTIP1 NonAssociatedWithProgression
ENSG00000088387 DOCK9 o++a
ENSG00000046604 DSG2 NonAssociatedWithProgression
ENSG00000120129 DUSP1 o--a
ENSG00000120875 DUSP4 ---
ENSG00000138166 DUSP5 +-o
ENSG00000133740 E2F5 o--b
ENSG00000134109 EDEM1 o--b
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000132507 EIF5A o--a
ENSG00000158711 ELK4 NonAssociatedWithProgression
ENSG00000012660 ELOVL5 NonAssociatedWithProgression
ENSG00000143420 ENSA oo-
ENSG00000105722 ERF ---
ENSG00000149806 FAU o-o
ENSG00000143756 FBXO28 NonAssociatedWithProgression
ENSG00000164117 FBXO8 o++b
ENSG00000135723 FHOD1 -+o
ENSG00000079150 FKBP7 o++a
ENSG00000125740 FOSB +-o
ENSG00000138757 G3BP2 NonAssociatedWithProgression
ENSG00000100083 GGA1 o--b
ENSG00000198814 GK -oo
ENSG00000173540 GMPPB o--b
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000078369 GNB1 o--a
ENSG00000172354 GNB2 ---
ENSG00000168243 GNG4 o--a
ENSG00000204590 GNL1 o--a
ENSG00000066455 GOLGA5 -+o
ENSG00000181773 GPR3 ---
ENSG00000177885 GRB2 NonAssociatedWithProgression
ENSG00000105447 GRWD1 ---
ENSG00000125651 GTF2F1 o--a
ENSG00000077235 GTF3C1 o--b
ENSG00000196176 HIST1H4A ---
ENSG00000159399 HK2 o--b
ENSG00000101294 HM13 o--b
ENSG00000149397 HMBS ---
ENSG00000103415 HMOX2 o--b
ENSG00000125968 ID1 o--a
ENSG00000067829 IDH3G ---
ENSG00000104365 IKBKB o++a
ENSG00000111653 ING4 o+-
ENSG00000086200 IPO11 o--a
ENSG00000136003 ISCU o+o
ENSG00000171223 JUNB ---
ENSG00000130522 JUND o--b
ENSG00000151079 KCNA6 NonAssociatedWithProgression
ENSG00000185760 KCNQ5 o++a
ENSG00000105438 KDELR1 NonAssociatedWithProgression
ENSG00000136240 KDELR2 o--b
ENSG00000133114 KIAA1704 NonAssociatedWithProgression
ENSG00000164118 KIAA1712 o++b
ENSG00000054523 KIF1B o++a
ENSG00000117153 KLHL12 o-o
ENSG00000122550 KLHL7 o+o
ENSG00000205629 LCMT1 --o
ENSG00000168806 LCMT2 NonAssociatedWithProgression
ENSG00000157193 LRP8 o--a
ENSG00000049323 LTBP1 -oo
ENSG00000130758 MAP3K10 o--a
ENSG00000073803 MAP3K13 o++a
ENSG00000069956 MAPK6 o+-
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000076706 MCAM o-o
ENSG00000140406 MESDC1 +oo
ENSG00000078403 MLLT10 o+o
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000011028 MRC2 o++a
ENSG00000149792 MRPL49 o-o
ENSG00000204568 MRPS18B o--a
ENSG00000148187 MRRF o--a
ENSG00000188786 MTF1 o+-
ENSG00000092841 MYL6 o-o
ENSG00000085274 MYNN NonAssociatedWithProgression
ENSG00000136504 MYST2 NonAssociatedWithProgression
ENSG00000166579 NDEL1 o++b
ENSG00000130414 NDUFA10 -o-
ENSG00000090266 NDUFB2 -oo
ENSG00000167792 NDUFV1 --o
ENSG00000196712 NF1 o+o
ENSG00000077150 NFKB2 NonAssociatedWithProgression
ENSG00000166681 NGFRAP1 NonAssociatedWithProgression
ENSG00000131669 NINJ1 NonAssociatedWithProgression
ENSG00000158793 NIT1 o++b
ENSG00000125820 NKX2-2 o-+
ENSG00000166197 NOLC1 o--b
ENSG00000131408 NR1H2 o--a
ENSG00000120798 NR2C1 NonAssociatedWithProgression
ENSG00000122643 NT5C3 NonAssociatedWithProgression
ENSG00000083635 NUFIP1 NonAssociatedWithProgression
ENSG00000110713 NUP98 o--a
ENSG00000136243 NUPL2 o+-
ENSG00000136811 ODF2 o--b
ENSG00000105953 OGDH ---
ENSG00000110048 OSBP o+o
ENSG00000007168 PAFAH1B1 o+-
ENSG00000180370 PAK2 ---
ENSG00000081154 PCNP NonAssociatedWithProgression
ENSG00000205268 PDE7A ---
ENSG00000124299 PEPD o--b
ENSG00000179094 PER1 ---
ENSG00000178921 PFAS ---
ENSG00000143256 PFDN2 NonAssociatedWithProgression
ENSG00000111752 PHC1 -oo
ENSG00000010318 PHF7 NonAssociatedWithProgression
ENSG00000172943 PHF8 oo+
ENSG00000110697 PITPNM1 ---
ENSG00000144283 PKP4 NonAssociatedWithProgression
ENSG00000142731 PLK4 o+-
ENSG00000224201 PNMA6A NonAssociatedWithProgression
ENSG00000070501 POLB o+-
ENSG00000100227 POLDIP3 o--a
ENSG00000131013 PPIL4 NonAssociatedWithProgression
ENSG00000100614 PPM1A o--a
ENSG00000204569 PPP1R10 o--b
ENSG00000204619 PPP1R11 o--b
ENSG00000087074 PPP1R15A ---
ENSG00000105568 PPP2R1A o--b
ENSG00000221914 PPP2R2A o--b
ENSG00000119414 PPP6C o--b
ENSG00000122490 PQLC1 o-o
ENSG00000072062 PRKACA ---
ENSG00000142875 PRKACB o--b
ENSG00000147471 PROSC -+o
ENSG00000136875 PRPF4 NonAssociatedWithProgression
ENSG00000204576 PRR3 o--b
ENSG00000204264 PSMB8 o--b
ENSG00000131467 PSME3 o-o
ENSG00000187514 PTMA o--b
ENSG00000104960 PTOV1 o-o
ENSG00000112245 PTP4A1 o--a
ENSG00000076201 PTPN23 o--b
ENSG00000146676 PURB o--a
ENSG00000099246 RAB18 o++b
ENSG00000105649 RAB3A NonAssociatedWithProgression
ENSG00000108774 RAB5C NonAssociatedWithProgression
ENSG00000108384 RAD51C o+-
ENSG00000153201 RANBP2 o+o
ENSG00000122257 RBBP6 ---
ENSG00000102054 RBBP7 o-o
ENSG00000101773 RBBP8 NonAssociatedWithProgression
ENSG00000119446 RBM18 -+o
ENSG00000076067 RBMS2 NonAssociatedWithProgression
ENSG00000173653 RCE1 o--b
ENSG00000173039 RELA o--a
ENSG00000104856 RELB o--b
ENSG00000142599 RERE o++b
ENSG00000163918 RFC4 o--a
ENSG00000163933 RFT1 --o
ENSG00000204227 RING1 o--a
ENSG00000124784 RIOK1 oo-
ENSG00000117000 RLF o-o
ENSG00000110315 RNF141 oo+
ENSG00000103549 RNF40 o--a
ENSG00000146083 RNF44 NonAssociatedWithProgression
ENSG00000204308 RNF5 o--b
ENSG00000114125 RNF7 o+o
ENSG00000142541 RPL13A NonAssociatedWithProgression
ENSG00000160753 RUSC1 o-o
ENSG00000075856 SART3 NonAssociatedWithProgression
ENSG00000198794 SCAMP5 ---
ENSG00000138802 SEC24B NonAssociatedWithProgression
ENSG00000187742 SECISBP2 o--b
ENSG00000163904 SENP2 o--a
ENSG00000161956 SENP3 o--b
ENSG00000168066 SF1 o-o
ENSG00000148339 SLC25A25 ---
ENSG00000145740 SLC30A5 o+o
ENSG00000134294 SLC38A2 oo-
ENSG00000165915 SLC39A13 ---
ENSG00000072041 SLC6A15 +-o
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000102172 SMS o-o
ENSG00000057252 SOAT1 NonAssociatedWithProgression
ENSG00000158480 SPATA2 NonAssociatedWithProgression
ENSG00000042317 SPATA7 +o+
ENSG00000063176 SPHK2 o-o
ENSG00000160460 SPTBN4 NonAssociatedWithProgression
ENSG00000182934 SRPR o--a
ENSG00000157216 SSBP3 o--a
ENSG00000180879 SSR4 ---
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000124356 STAMBP o--b
ENSG00000168610 STAT3 o--b
ENSG00000116266 STXBP3 o+o
ENSG00000116030 SUMO1 NonAssociatedWithProgression
ENSG00000159082 SYNJ1 NonAssociatedWithProgression
ENSG00000166337 TAF10 o--a
ENSG00000064995 TAF11 o--b
ENSG00000158710 TAGLN2 o--b
ENSG00000106052 TAX1BP1 o+o
ENSG00000172465 TCEAL1 oo+
ENSG00000132604 TERF2 o--a
ENSG00000072274 TFRC o++a
ENSG00000115970 THADA NonAssociatedWithProgression
ENSG00000185875 THNSL1 o++b
ENSG00000126351 THRA --o
ENSG00000140332 TLE3 ---
ENSG00000241697 TMEFF1 o+o
ENSG00000109079 TNFAIP1 o--a
ENSG00000173273 TNKS o--a
ENSG00000107854 TNKS2 o-+
ENSG00000130204 TOMM40 o--a
ENSG00000078804 TP53INP2 NonAssociatedWithProgression
ENSG00000133112 TPT1 oo-
ENSG00000126602 TRAP1 o--a
ENSG00000170043 TRAPPC1 o--a
ENSG00000173334 TRIB1 o--b
ENSG00000204599 TRIM39 oo-
ENSG00000074319 TSG101 NonAssociatedWithProgression
ENSG00000221983 UBA52 o--a
ENSG00000170315 UBB ---
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000186591 UBE2H NonAssociatedWithProgression
ENSG00000188021 UBQLN2 +oo
ENSG00000143222 UFC1 NonAssociatedWithProgression
ENSG00000114491 UMPS NonAssociatedWithProgression
ENSG00000138592 USP8 o+-
ENSG00000220205 VAMP2 o--b
ENSG00000185222 WBP5 NonAssociatedWithProgression
ENSG00000071127 WDR1 NonAssociatedWithProgression
ENSG00000100219 XBP1 -+o
ENSG00000108039 XPNPEP1 o++b
ENSG00000196584 XRCC2 ---
ENSG00000136758 YME1L1 NonAssociatedWithProgression
ENSG00000170027 YWHAG o+-
ENSG00000131732 ZCCHC9 NonAssociatedWithProgression
ENSG00000056097 ZFR o--b
ENSG00000067646 ZFY NonAssociatedWithProgression
ENSG00000096654 ZNF184 +o+
ENSG00000167377 ZNF23 o+o
ENSG00000165244 ZNF367 NonAssociatedWithProgression
ENSG00000074755 ZZEF1 ---