PEACHi
GeneSet GCCATNTTG_V$YY1_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.4 0.03098 187.0 132.0 110.43
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000113812 ACTR8 o+o
ENSG00000156110 ADK -+o
ENSG00000101126 ADNP NonAssociatedWithProgression
ENSG00000139154 AEBP2 NonAssociatedWithProgression
ENSG00000204310 AGPAT1 o--b
ENSG00000110711 AIP o--a
ENSG00000105127 AKAP8 NonAssociatedWithProgression
ENSG00000011243 AKAP8L ---
ENSG00000053900 ANAPC4 NonAssociatedWithProgression
ENSG00000166747 AP1G1 o+-
ENSG00000065000 AP3D1 o+o
ENSG00000166313 APBB1 o-o
ENSG00000105290 APLP1 oo+
ENSG00000095139 ARCN1 o-o
ENSG00000143761 ARF1 o--b
ENSG00000032219 ARID4A o-+
ENSG00000163466 ARPC2 -o-
ENSG00000143970 ASXL2 o--b
ENSG00000107669 ATE1 -+o
ENSG00000123268 ATF1 o--b
ENSG00000128272 ATF4 o--b
ENSG00000152234 ATP5A1 -o-
ENSG00000116459 ATP5F1 NonAssociatedWithProgression
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000135390 ATP5G2 oo-
ENSG00000185883 ATP6V0C o--b
ENSG00000085224 ATRX -oo
ENSG00000095739 BAMBI NonAssociatedWithProgression
ENSG00000099968 BCL2L13 oo+
ENSG00000145741 BTF3 o--b
ENSG00000166167 BTRC --o
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000134779 C18orf10 NonAssociatedWithProgression
ENSG00000125871 C20orf72 NonAssociatedWithProgression
ENSG00000160298 C21orf58 NonAssociatedWithProgression
ENSG00000124596 C6orf130 o-o
ENSG00000196642 C9orf86 o--b
ENSG00000102547 CAB39L -+o
ENSG00000108349 CASC3 o-o
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000108091 CCDC6 o+-
ENSG00000100814 CCNB1IP1 o+-
ENSG00000090061 CCNK +-o
ENSG00000135535 CD164 oo-
ENSG00000010610 CD4 o--b
ENSG00000111276 CDKN1B +o+
ENSG00000008300 CELSR3 ---
ENSG00000173575 CHD2 o--b
ENSG00000113240 CLK4 o++b
ENSG00000088038 CNOT3 o--a
ENSG00000131174 COX7B o+o
ENSG00000176340 COX8A o-o
ENSG00000214078 CPNE1 o--b
ENSG00000165934 CPSF2 NonAssociatedWithProgression
ENSG00000099942 CRKL o--b
ENSG00000124207 CSE1L o--a
ENSG00000113712 CSNK1A1 o+o
ENSG00000102974 CTCF o--b
ENSG00000132676 DAP3 o--a
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000215301 DDX3X oo-
ENSG00000110367 DDX6 o--b
ENSG00000070413 DGCR2 o-o
ENSG00000101452 DHX35 NonAssociatedWithProgression
ENSG00000107099 DOCK8 NonAssociatedWithProgression
ENSG00000164086 DUSP7 o--a
ENSG00000114942 EEF1B2 -o-
ENSG00000115211 EIF2B4 o-o
ENSG00000161960 EIF4A1 -o-
ENSG00000110321 EIF4G2 o+-
ENSG00000100664 EIF5 o--b
ENSG00000143420 ENSA oo-
ENSG00000100393 EP300 o++b
ENSG00000120616 EPC1 o--b
ENSG00000135999 EPC2 oo-
ENSG00000182473 EXOC7 --o
ENSG00000181027 FKRP o+o
ENSG00000114861 FOXP1 oo-
ENSG00000108592 FTSJ3 NonAssociatedWithProgression
ENSG00000089280 FUS o+-
ENSG00000107862 GBF1 o-o
ENSG00000127554 GFER ---
ENSG00000139436 GIT2 NonAssociatedWithProgression
ENSG00000114353 GNAI2 --o
ENSG00000189060 H1F0 o--b
ENSG00000169635 HIC2 o--a
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000189159 HN1 o-+
ENSG00000185122 HSF1 ---
ENSG00000109971 HSPA8 ---
ENSG00000067829 IDH3G ---
ENSG00000129351 ILF3 -o-
ENSG00000071243 ING3 o--b
ENSG00000111653 ING4 o+-
ENSG00000184216 IRAK1 o--a
ENSG00000176842 IRX5 o-o
ENSG00000008083 JARID2 o-o
ENSG00000182149 KIAA0174 o-o
ENSG00000163807 KIAA1143 o--a
ENSG00000198894 KIAA1737 o--a
ENSG00000054523 KIF1B o++a
ENSG00000184445 KNTC1 o+o
ENSG00000025800 KPNA6 o--b
ENSG00000100395 L3MBTL2 o--b
ENSG00000113368 LMNB1 o--b
ENSG00000072071 LPHN1 ---
ENSG00000011009 LYPLA2 o--a
ENSG00000090316 MAEA o+-
ENSG00000137764 MAP2K5 o--a
ENSG00000085511 MAP3K4 o--a
ENSG00000075413 MARK3 NonAssociatedWithProgression
ENSG00000168906 MAT2A ---
ENSG00000165819 METTL3 -+o
ENSG00000101574 METTL4 NonAssociatedWithProgression
ENSG00000005483 MLL5 +oo
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000129255 MPDU1 o--b
ENSG00000169288 MRPL1 o-o
ENSG00000174547 MRPL11 ---
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000100330 MTMR3 NonAssociatedWithProgression
ENSG00000085274 MYNN NonAssociatedWithProgression
ENSG00000136504 MYST2 NonAssociatedWithProgression
ENSG00000196531 NACA NonAssociatedWithProgression
ENSG00000132780 NASP o--a
ENSG00000172915 NBEA -+o
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000198646 NCOA6 o--b
ENSG00000183648 NDUFB1 -+o
ENSG00000023228 NDUFS1 o+o
ENSG00000110717 NDUFS8 o--a
ENSG00000082641 NFE2L1 NonAssociatedWithProgression
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000177463 NR2C2 NonAssociatedWithProgression
ENSG00000073969 NSF o++a
ENSG00000112664 NUDT3 o--a
ENSG00000007168 PAFAH1B1 o+-
ENSG00000115421 PAPOLG o++b
ENSG00000090097 PCBP4 o-o
ENSG00000165494 PCF11 oo-
ENSG00000070087 PFN2 NonAssociatedWithProgression
ENSG00000109118 PHF12 o--a
ENSG00000069011 PITX1 +o+
ENSG00000160783 PMF1 o-o
ENSG00000189266 PNRC2 o+o
ENSG00000181222 POLR2A ---
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000186298 PPP1CC o--b
ENSG00000158615 PPP1R15B +-o
ENSG00000113575 PPP2CA o--b
ENSG00000221914 PPP2R2A o--b
ENSG00000163605 PPP4R2 o-o
ENSG00000170325 PRDM10 o+o
ENSG00000130175 PRKCSH o--b
ENSG00000147471 PROSC -+o
ENSG00000141127 PRPSAP2 o-o
ENSG00000087191 PSMC5 -+o
ENSG00000121390 PSPC1 o+o
ENSG00000011304 PTBP1 ---
ENSG00000187514 PTMA o--b
ENSG00000134644 PUM1 o--a
ENSG00000084733 RAB10 NonAssociatedWithProgression
ENSG00000138069 RAB1A o++b
ENSG00000124209 RAB22A o+-
ENSG00000157869 RAB28 o--b
ENSG00000167578 RAB4B ---
ENSG00000144566 RAB5A NonAssociatedWithProgression
ENSG00000161800 RACGAP1 o-+
ENSG00000164754 RAD21 o--b
ENSG00000006451 RALA o-+
ENSG00000182872 RBM10 o--a
ENSG00000244462 RBM12 o--b
ENSG00000213079 RBM16 o--a
ENSG00000102317 RBM3 -o-
ENSG00000003756 RBM5 o-o
ENSG00000153250 RBMS1 o++b
ENSG00000147274 RBMX oo-
ENSG00000122707 RECK NonAssociatedWithProgression
ENSG00000132005 RFX1 ---
ENSG00000080345 RIF1 NonAssociatedWithProgression
ENSG00000173456 RNF26 o--a
ENSG00000204308 RNF5 o--b
ENSG00000147403 RPL10 o-o
ENSG00000105640 RPL18A o-o
ENSG00000182899 RPL35A NonAssociatedWithProgression
ENSG00000163902 RPN1 o-o
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression
ENSG00000142937 RPS8 NonAssociatedWithProgression
ENSG00000167325 RRM1 o--a
ENSG00000176783 RUFY1 --o
ENSG00000204231 RXRB NonAssociatedWithProgression
ENSG00000160633 SAFB o--b
ENSG00000136193 SCRN1 --o
ENSG00000100934 SEC23A o++b
ENSG00000099995 SF3A1 o+-
ENSG00000116560 SFPQ +-o
ENSG00000164466 SFXN1 --o
ENSG00000225697 SLC26A6 o--a
ENSG00000112473 SLC39A7 o-o
ENSG00000135632 SMYD5 ---
ENSG00000071189 SNX13 NonAssociatedWithProgression
ENSG00000115234 SNX17 o--a
ENSG00000089006 SNX5 oo-
ENSG00000185591 SP1 o--a
ENSG00000163486 SRGAP2 NonAssociatedWithProgression
ENSG00000180879 SSR4 ---
ENSG00000196792 STRN3 o+o
ENSG00000090372 STRN4 o--b
ENSG00000188612 SUMO2 NonAssociatedWithProgression
ENSG00000054654 SYNE2 o--b
ENSG00000132718 SYT11 NonAssociatedWithProgression
ENSG00000172660 TAF15 o--b
ENSG00000106290 TAF6 NonAssociatedWithProgression
ENSG00000120948 TARDBP o--a
ENSG00000213977 TAX1BP3 ---
ENSG00000132405 TBC1D14 o++a
ENSG00000131931 THAP1 NonAssociatedWithProgression
ENSG00000116001 TIA1 -o-
ENSG00000151923 TIAL1 o+o
ENSG00000177302 TOP3A o--a
ENSG00000067369 TP53BP1 o+o
ENSG00000164548 TRA2A NonAssociatedWithProgression
ENSG00000165699 TSC1 NonAssociatedWithProgression
ENSG00000063244 U2AF2 ---
ENSG00000221983 UBA52 o--a
ENSG00000165006 UBAP1 o-o
ENSG00000160087 UBE2J2 ---
ENSG00000114062 UBE3A NonAssociatedWithProgression
ENSG00000125351 UPF3B NonAssociatedWithProgression
ENSG00000173660 UQCRH NonAssociatedWithProgression
ENSG00000101557 USP14 o--b
ENSG00000106299 WASL o+o
ENSG00000174374 WBSCR16 ---
ENSG00000101940 WDR13 o--b
ENSG00000185049 WHSC2 o--b
ENSG00000108953 YWHAE NonAssociatedWithProgression
ENSG00000174282 ZBTB4 o-+
ENSG00000156599 ZDHHC5 o--b
ENSG00000005889 ZFX o--b
ENSG00000067646 ZFY NonAssociatedWithProgression
ENSG00000166478 ZNF143 o+o
ENSG00000010244 ZNF207 NonAssociatedWithProgression
ENSG00000171467 ZNF318 NonAssociatedWithProgression
ENSG00000198026 ZNF335 NonAssociatedWithProgression