PEACHi
GeneSet GCATTTG,MIR-105 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o+o -3.4 0.04965 65.0 11.0 3.85
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000101935 AMMECR1 o--b
ENSG00000126016 AMOT NonAssociatedWithProgression
ENSG00000102606 ARHGEF7 NonAssociatedWithProgression
ENSG00000131089 ARHGEF9 o--b
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000141034 C17orf39 o--a
ENSG00000173065 C17orf63 o--b
ENSG00000152242 C18orf25 o--a
ENSG00000185127 C6orf120 o+o
ENSG00000148660 CAMK2G o+o
ENSG00000126653 CCDC55 o--a
ENSG00000111276 CDKN1B +o+
ENSG00000138663 COPS4 o+o
ENSG00000198612 COPS8 NonAssociatedWithProgression
ENSG00000115520 COQ10B o+o
ENSG00000146592 CREB5 +oo
ENSG00000167193 CRK o+o
ENSG00000168772 CXXC4 +o+
ENSG00000100697 DICER1 NonAssociatedWithProgression
ENSG00000092847 EIF2C1 -+o
ENSG00000110321 EIF4G2 o+-
ENSG00000162694 EXTL2 NonAssociatedWithProgression
ENSG00000128578 FAM40B o++a
ENSG00000102531 FNDC3A o+o
ENSG00000198815 FOXJ3 NonAssociatedWithProgression
ENSG00000164916 FOXK1 +-o
ENSG00000155760 FZD7 o++a
ENSG00000034713 GABARAPL2 -+o
ENSG00000128683 GAD1 -+o
ENSG00000111711 GOLT1B o-o
ENSG00000108587 GOSR1 NonAssociatedWithProgression
ENSG00000164284 GRPEL2 o-o
ENSG00000163041 H3F3A NonAssociatedWithProgression
ENSG00000132475 H3F3B o--b
ENSG00000167220 HDHD2 -oo
ENSG00000091409 ITGA6 NonAssociatedWithProgression
ENSG00000136156 ITM2B NonAssociatedWithProgression
ENSG00000165572 KBTBD6 o-+
ENSG00000189367 KIAA0408 o++b
ENSG00000120071 KIAA1267 oo-
ENSG00000118922 KLF12 o+o
ENSG00000186432 KPNA4 NonAssociatedWithProgression
ENSG00000133703 KRAS o+o
ENSG00000198945 L3MBTL3 NonAssociatedWithProgression
ENSG00000198728 LDB1 o--b
ENSG00000169967 MAP3K2 +o+
ENSG00000169057 MECP2 o--a
ENSG00000118058 MLL o--a
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000119950 MXI1 +-o
ENSG00000007944 MYLIP ---
ENSG00000172915 NBEA -+o
ENSG00000084676 NCOA1 NonAssociatedWithProgression
ENSG00000186575 NF2 o--b
ENSG00000180304 OAZ2 o+o
ENSG00000147162 OGT o-o
ENSG00000152520 PAN3 NonAssociatedWithProgression
ENSG00000175198 PCCA NonAssociatedWithProgression
ENSG00000123360 PDE1B o-+
ENSG00000109118 PHF12 o--a
ENSG00000102221 PHF16 NonAssociatedWithProgression
ENSG00000129292 PHF20L1 o++b
ENSG00000152192 POU4F1 oo+
ENSG00000221823 PPP3R1 +oo
ENSG00000116731 PRDM2 -oo
ENSG00000112739 PRPF4B o+o
ENSG00000144724 PTPRG NonAssociatedWithProgression
ENSG00000183255 PTTG1IP o--a
ENSG00000174903 RAB1B o-o
ENSG00000124209 RAB22A o+-
ENSG00000123728 RAP2C o++b
ENSG00000023287 RB1CC1 o+o
ENSG00000163602 RYBP -o-
ENSG00000119042 SATB2 -+o
ENSG00000119953 SMNDC1 +oo
ENSG00000163877 SNIP1 +-o
ENSG00000171150 SOCS5 oo-
ENSG00000159140 SON NonAssociatedWithProgression
ENSG00000172845 SP3 NonAssociatedWithProgression
ENSG00000105866 SP4 NonAssociatedWithProgression
ENSG00000196935 SRGAP1 o++a
ENSG00000177565 TBL1XR1 o-o
ENSG00000136478 TEX2 o++a
ENSG00000079134 THOC1 NonAssociatedWithProgression
ENSG00000163659 TIPARP NonAssociatedWithProgression
ENSG00000125304 TM9SF2 NonAssociatedWithProgression
ENSG00000006327 TNFRSF12A NonAssociatedWithProgression
ENSG00000078804 TP53INP2 NonAssociatedWithProgression
ENSG00000143549 TPM3 oo-
ENSG00000130338 TULP4 NonAssociatedWithProgression
ENSG00000140553 UNC45A -o-
ENSG00000135655 USP15 NonAssociatedWithProgression
ENSG00000185728 YTHDF3 o--b
ENSG00000056097 ZFR o--b