PEACHi
GeneSet GCANCTGNY_V$MYOD_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -5.2 9.1E-4 299.0 249.0 217.84
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000150967 ABCB9 o--a
ENSG00000159842 ABR oo+
ENSG00000075624 ACTB o--b
ENSG00000156110 ADK -+o
ENSG00000101935 AMMECR1 o--b
ENSG00000145362 ANK2 +oo
ENSG00000132466 ANKRD17 ---
ENSG00000140350 ANP32A o--a
ENSG00000129675 ARHGEF6 ---
ENSG00000171681 ATF7IP ---
ENSG00000143153 ATP1B1 -oo
ENSG00000174437 ATP2A2 -o-
ENSG00000110955 ATP5B o--b
ENSG00000158321 AUTS2 o++b
ENSG00000168646 AXIN2 o++b
ENSG00000121753 BAI2 o--a
ENSG00000076108 BAZ2A o++b
ENSG00000141376 BCAS3 -oo
ENSG00000110987 BCL7A -o-
ENSG00000133134 BEX2 +o+
ENSG00000204217 BMPR2 NonAssociatedWithProgression
ENSG00000140299 BNIP2 NonAssociatedWithProgression
ENSG00000141867 BRD4 oo-
ENSG00000166272 C10orf26 ---
ENSG00000078237 C12orf5 o++b
ENSG00000160284 C21orf56 ---
ENSG00000067191 CACNB1 ---
ENSG00000198668 CALM1 NonAssociatedWithProgression
ENSG00000160014 CALM3 o--a
ENSG00000183049 CAMK1D o++a
ENSG00000004660 CAMKK1 ---
ENSG00000147044 CASK o++b
ENSG00000129993 CBFA2T3 NonAssociatedWithProgression
ENSG00000175305 CCNE2 NonAssociatedWithProgression
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000196776 CD47 NonAssociatedWithProgression
ENSG00000137101 CD72 o-o
ENSG00000163171 CDC42EP3 NonAssociatedWithProgression
ENSG00000111276 CDKN1B +o+
ENSG00000170175 CHRNB1 +o+
ENSG00000164442 CITED2 o++b
ENSG00000106404 CLDN15 o--b
ENSG00000139182 CLSTN3 NonAssociatedWithProgression
ENSG00000149970 CNKSR2 -oo
ENSG00000114270 COL7A1 NonAssociatedWithProgression
ENSG00000214078 CPNE1 o--b
ENSG00000163703 CRELD1 --o
ENSG00000070770 CSNK2A2 o-o
ENSG00000055163 CYFIP2 o--b
ENSG00000083799 CYLD o--b
ENSG00000168209 DDIT4 o+-
ENSG00000070413 DGCR2 o-o
ENSG00000104936 DMPK ---
ENSG00000172869 DMXL1 +-o
ENSG00000197959 DNM3 o++b
ENSG00000119772 DNMT3A o-o
ENSG00000149927 DOC2A --o
ENSG00000120875 DUSP4 ---
ENSG00000161202 DVL3 o--a
ENSG00000101412 E2F1 o--b
ENSG00000107223 EDF1 o--b
ENSG00000156508 EEF1A1 o--a
ENSG00000169242 EFNA1 oo+
ENSG00000135766 EGLN1 o++b
ENSG00000110047 EHD1 ---
ENSG00000070785 EIF2B3 NonAssociatedWithProgression
ENSG00000156976 EIF4A2 o+o
ENSG00000184708 EIF4ENIF1 o-o
ENSG00000110321 EIF4G2 o+-
ENSG00000109911 ELP4 NonAssociatedWithProgression
ENSG00000165521 EML5 o++b
ENSG00000100393 EP300 o++b
ENSG00000105722 ERF ---
ENSG00000120705 ETF1 o--a
ENSG00000106462 EZH2 NonAssociatedWithProgression
ENSG00000103089 FA2H o--a
ENSG00000156804 FBXO32 NonAssociatedWithProgression
ENSG00000090920 FCGBP o++a
ENSG00000146192 FGD2 -+o
ENSG00000077782 FGFR1 o++a
ENSG00000000938 FGR o--b
ENSG00000102081 FMR1 o+-
ENSG00000170345 FOS NonAssociatedWithProgression
ENSG00000033170 FUT8 -+o
ENSG00000010810 FYN +oo
ENSG00000033327 GAB2 +o+
ENSG00000107485 GATA3 o+o
ENSG00000162676 GFI1 o-o
ENSG00000151892 GFRA1 NonAssociatedWithProgression
ENSG00000108262 GIT1 -o-
ENSG00000089639 GMIP --o
ENSG00000171723 GPHN -+o
ENSG00000198873 GRK5 +oo
ENSG00000198055 GRK6 ---
ENSG00000082701 GSK3B -o-
ENSG00000163517 HDAC11 -oo
ENSG00000143321 HDGF ---
ENSG00000013583 HEBP1 o-+
ENSG00000144485 HES6 ---
ENSG00000163666 HESX1 o++b
ENSG00000100084 HIRA ---
ENSG00000127124 HIVEP3 +-o
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000189159 HN1 o-+
ENSG00000152795 HNRPDL oo-
ENSG00000204228 HSD17B8 o--b
ENSG00000125968 ID1 o--a
ENSG00000182054 IDH2 NonAssociatedWithProgression
ENSG00000140443 IGF1R o++b
ENSG00000115461 IGFBP5 NonAssociatedWithProgression
ENSG00000162729 IGSF8 ---
ENSG00000117408 IPO13 NonAssociatedWithProgression
ENSG00000176842 IRX5 o-o
ENSG00000135424 ITGA7 NonAssociatedWithProgression
ENSG00000147166 ITGB1BP2 -o-
ENSG00000132470 ITGB4 ---
ENSG00000096433 ITPR3 o-o
ENSG00000055118 KCNH2 -oo
ENSG00000185760 KCNQ5 o++a
ENSG00000197892 KIF13B +o+
ENSG00000054523 KIF1B o++a
ENSG00000126259 KIRREL2 ---
ENSG00000118922 KLF12 o+o
ENSG00000169926 KLF13 oo-
ENSG00000167748 KLK1 +-o
ENSG00000163463 KRTCAP2 o-o
ENSG00000100395 L3MBTL2 o--b
ENSG00000198728 LDB1 o--b
ENSG00000138795 LEF1 -o-
ENSG00000110811 LEPREL2 ---
ENSG00000114988 LMAN2L o--b
ENSG00000143013 LMO4 -+o
ENSG00000162337 LRP5 NonAssociatedWithProgression
ENSG00000175928 LRRN1 o+o
ENSG00000179222 MAGED1 NonAssociatedWithProgression
ENSG00000166963 MAP1A o--b
ENSG00000197442 MAP3K5 o++a
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000076706 MCAM o-o
ENSG00000159479 MED8 o--b
ENSG00000116604 MEF2D o--b
ENSG00000100060 MFNG o--a
ENSG00000118058 MLL o--a
ENSG00000005483 MLL5 +oo
ENSG00000108292 MLLT6 o--a
ENSG00000103150 MLYCD NonAssociatedWithProgression
ENSG00000102996 MMP15 ---
ENSG00000123562 MORF4L2 NonAssociatedWithProgression
ENSG00000101928 MOSPD1 o+o
ENSG00000108852 MPP2 NonAssociatedWithProgression
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000243927 MRPS6 o+o
ENSG00000173171 MTX1 o--a
ENSG00000160953 MUM1 o--a
ENSG00000123933 MXD4 ---
ENSG00000136997 MYC o--b
ENSG00000214114 MYCBP -oo
ENSG00000133026 MYH10 o--a
ENSG00000109063 MYH3 NonAssociatedWithProgression
ENSG00000108784 NAGLU ---
ENSG00000172915 NBEA -+o
ENSG00000189043 NDUFA4 -+o
ENSG00000166136 NDUFB8 o-o
ENSG00000178403 NEUROG2 NonAssociatedWithProgression
ENSG00000169992 NLGN2 o-o
ENSG00000148400 NOTCH1 o+o
ENSG00000141279 NPEPPS ---
ENSG00000213281 NRAS o--b
ENSG00000154146 NRGN --o
ENSG00000108559 NUP88 NonAssociatedWithProgression
ENSG00000115758 ODC1 o--b
ENSG00000164830 OXR1 o+-
ENSG00000145730 PAM oo+
ENSG00000090097 PCBP4 o-o
ENSG00000165494 PCF11 oo-
ENSG00000078674 PCM1 o--a
ENSG00000205268 PDE7A ---
ENSG00000139946 PELI2 +oo
ENSG00000179094 PER1 ---
ENSG00000073921 PICALM +o+
ENSG00000102096 PIM2 NonAssociatedWithProgression
ENSG00000144283 PKP4 NonAssociatedWithProgression
ENSG00000126003 PLAGL2 +-o
ENSG00000176903 PNMA1 +oo
ENSG00000101346 POFUT1 -oo
ENSG00000175482 POLD4 --o
ENSG00000146707 POMZP3 o--b
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000155846 PPARGC1B NonAssociatedWithProgression
ENSG00000100614 PPM1A o--a
ENSG00000172531 PPP1CA o--a
ENSG00000198729 PPP1R14C ---
ENSG00000101445 PPP1R16B o++a
ENSG00000068971 PPP2R5B NonAssociatedWithProgression
ENSG00000138814 PPP3CA o++b
ENSG00000107758 PPP3CB o+-
ENSG00000080815 PSEN1 o-o
ENSG00000164985 PSIP1 o-o
ENSG00000108344 PSMD3 ---
ENSG00000152894 PTPRK NonAssociatedWithProgression
ENSG00000185129 PURA ---
ENSG00000105649 RAB3A NonAssociatedWithProgression
ENSG00000111540 RAB5B o--b
ENSG00000175582 RAB6A o++b
ENSG00000105404 RABAC1 o--a
ENSG00000111344 RASAL1 --o
ENSG00000101265 RASSF2 o++a
ENSG00000102054 RBBP7 o-o
ENSG00000132005 RFX1 ---
ENSG00000138835 RGS3 o++a
ENSG00000082996 RNF13 o++b
ENSG00000067900 ROCK1 o+o
ENSG00000143365 RORC o--b
ENSG00000106399 RPA3 o++b
ENSG00000174444 RPL4 o--b
ENSG00000231500 RPS18 o-o
ENSG00000116954 RRAGC +o+
ENSG00000114993 RTKN NonAssociatedWithProgression
ENSG00000176783 RUFY1 --o
ENSG00000198863 RUNDC1 NonAssociatedWithProgression
ENSG00000159216 RUNX1 o--b
ENSG00000163785 RYK --o
ENSG00000092108 SCFD1 o-o
ENSG00000196876 SCN8A -+o
ENSG00000110876 SELPLG ---
ENSG00000140264 SERF2 ---
ENSG00000142669 SH3BGRL3 o--b
ENSG00000100092 SH3BP1 --o
ENSG00000136603 SKIL NonAssociatedWithProgression
ENSG00000092096 SLC22A17 ---
ENSG00000183048 SLC25A10 ---
ENSG00000005022 SLC25A5 NonAssociatedWithProgression
ENSG00000134802 SLC43A3 o--a
ENSG00000065923 SLC9A7 -+o
ENSG00000181804 SLC9A9 o++b
ENSG00000168807 SNTB2 o--b
ENSG00000090487 SPG21 --o
ENSG00000121067 SPOP o--b
ENSG00000104549 SQLE +oo
ENSG00000198911 SREBF2 ---
ENSG00000135250 SRPK2 o-o
ENSG00000117155 SSX2IP -o-
ENSG00000172345 STARD5 -+o
ENSG00000126561 STAT5A o-o
ENSG00000196792 STRN3 o+o
ENSG00000076944 STXBP2 o--b
ENSG00000092201 SUPT16H o--a
ENSG00000148248 SURF4 o--b
ENSG00000159164 SV2A o--a
ENSG00000197321 SVIL o++b
ENSG00000131018 SYNE1 o++b
ENSG00000100321 SYNGR1 oo+
ENSG00000147526 TACC1 o+o
ENSG00000139192 TAPBPL o+o
ENSG00000102125 TAZ o-+
ENSG00000124659 TBCC o--a
ENSG00000101849 TBL1X +-o
ENSG00000028839 TBPL1 NonAssociatedWithProgression
ENSG00000140262 TCF12 o--a
ENSG00000081059 TCF7 o+-
ENSG00000182134 TDRKH ---
ENSG00000135605 TEC -+o
ENSG00000167074 TEF ---
ENSG00000087510 TFAP2C o--a
ENSG00000090447 TFAP4 o--b
ENSG00000112561 TFEB ---
ENSG00000118707 TGIF2 ---
ENSG00000146072 TNFRSF21 o--a
ENSG00000107854 TNKS2 o-+
ENSG00000186815 TPCN1 --o
ENSG00000198467 TPM2 ---
ENSG00000137364 TPMT o+o
ENSG00000124496 TRERF1 --o
ENSG00000173334 TRIB1 o--b
ENSG00000113595 TRIM23 o++b
ENSG00000163462 TRIM46 -oo
ENSG00000043514 TRIT1 o+-
ENSG00000196689 TRPV1 o++a
ENSG00000104833 TUBB4 ---
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000109103 UNC119 --o
ENSG00000135655 USP15 NonAssociatedWithProgression
ENSG00000139190 VAMP1 o++b
ENSG00000173511 VEGFB o--b
ENSG00000223501 VPS52 ---
ENSG00000108379 WNT3 o+o
ENSG00000082898 XPO1 o-o
ENSG00000130227 XPO7 o--b
ENSG00000100027 YPEL1 NonAssociatedWithProgression
ENSG00000198492 YTHDF2 o--a
ENSG00000108953 YWHAE NonAssociatedWithProgression
ENSG00000164924 YWHAZ o--b
ENSG00000186660 ZFP91 +-o
ENSG00000179456 ZNF238 o-o
ENSG00000165244 ZNF367 NonAssociatedWithProgression
ENSG00000197037 ZNF498 o-o
ENSG00000165655 ZNF503 -+o
ENSG00000019995 ZRANB1 NonAssociatedWithProgression