PEACHi
GeneSet ENDOMEMBRANE_SYSTEM (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o-o -2.5 0.04696 124.0 19.0 10.4
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000094914 AAAS o--a
ENSG00000125257 ABCC4 o++a
ENSG00000119844 AFTPH NonAssociatedWithProgression
ENSG00000214160 ALG3 o--a
ENSG00000159461 AMFR o-o
ENSG00000213983 AP1G2 ---
ENSG00000106367 AP1S1 ---
ENSG00000042753 AP2S1 o--b
ENSG00000095139 ARCN1 o-o
ENSG00000124198 ARFGEF2 o+o
ENSG00000164144 ARFIP1 o++b
ENSG00000118217 ATF6 o--a
ENSG00000017260 ATP2C1 oo-
ENSG00000165240 ATP7A o++b
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000105829 BET1 NonAssociatedWithProgression
ENSG00000113734 BNIP1 o--b
ENSG00000140299 BNIP2 NonAssociatedWithProgression
ENSG00000104765 BNIP3L NonAssociatedWithProgression
ENSG00000168000 BSCL2 ---
ENSG00000165806 CASP7 o-o
ENSG00000094916 CBX5 NonAssociatedWithProgression
ENSG00000117724 CENPF o--a
ENSG00000131165 CHMP1A o--a
ENSG00000188603 CLN3 o++b
ENSG00000135775 COG2 o--a
ENSG00000129083 COPB1 o+-
ENSG00000184432 COPB2 -+o
ENSG00000105669 COPE o-o
ENSG00000181789 COPG NonAssociatedWithProgression
ENSG00000158623 COPG2 NonAssociatedWithProgression
ENSG00000111481 COPZ1 o--a
ENSG00000163626 COX18 o--b
ENSG00000129562 DAD1 -oo
ENSG00000244038 DDOST o--a
ENSG00000157349 DDX19B NonAssociatedWithProgression
ENSG00000136986 DERL1 NonAssociatedWithProgression
ENSG00000072849 DERL2 o-o
ENSG00000172893 DHCR7 o--b
ENSG00000167130 DOLPP1 NonAssociatedWithProgression
ENSG00000083097 DOPEY1 o-+
ENSG00000000419 DPM1 o+-
ENSG00000136908 DPM2 o--a
ENSG00000179085 DPM3 o-o
ENSG00000145194 ECE2 ---
ENSG00000134109 EDEM1 o--b
ENSG00000132507 EIF5A o--a
ENSG00000102119 EMD o-o
ENSG00000197217 ENTPD4 NonAssociatedWithProgression
ENSG00000120616 EPC1 o--b
ENSG00000107566 ERLIN1 o-o
ENSG00000147475 ERLIN2 o+o
ENSG00000151348 EXT2 NonAssociatedWithProgression
ENSG00000214253 FIS1 --o
ENSG00000119392 GLE1 NonAssociatedWithProgression
ENSG00000090863 GLG1 o-+
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000128266 GNAZ NonAssociatedWithProgression
ENSG00000173230 GOLGB1 o--b
ENSG00000051108 HERPUD1 +oo
ENSG00000113161 HMGCR +oo
ENSG00000166598 HSP90B1 NonAssociatedWithProgression
ENSG00000109854 HTATIP2 o+-
ENSG00000115317 HTRA2 o--a
ENSG00000003147 ICA1 NonAssociatedWithProgression
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000054523 KIF1B o++a
ENSG00000114030 KPNA1 NonAssociatedWithProgression
ENSG00000102753 KPNA3 NonAssociatedWithProgression
ENSG00000108424 KPNB1 o--a
ENSG00000163463 KRTCAP2 o-o
ENSG00000126777 KTN1 NonAssociatedWithProgression
ENSG00000005893 LAMP2 o-+
ENSG00000143815 LBR +oo
ENSG00000174106 LEMD3 +-o
ENSG00000074695 LMAN1 o-o
ENSG00000114988 LMAN2L o--b
ENSG00000113368 LMNB1 o--b
ENSG00000118308 LRMP o--a
ENSG00000102158 MAGT1 o-+
ENSG00000168067 MAP4K2 ---
ENSG00000015479 MATR3 -o-
ENSG00000115364 MRPL19 NonAssociatedWithProgression
ENSG00000141562 NARF NonAssociatedWithProgression
ENSG00000172915 NBEA -+o
ENSG00000125967 NECAB3 ---
ENSG00000157191 NECAP2 o-o
ENSG00000141458 NPC1 o++b
ENSG00000182446 NPLOC4 o--a
ENSG00000115216 NRBP1 ---
ENSG00000137404 NRM o--a
ENSG00000111581 NUP107 -+o
ENSG00000069248 NUP133 o+-
ENSG00000124789 NUP153 o+-
ENSG00000030066 NUP160 NonAssociatedWithProgression
ENSG00000126883 NUP214 NonAssociatedWithProgression
ENSG00000093000 NUP50 NonAssociatedWithProgression
ENSG00000138750 NUP54 o-o
ENSG00000213024 NUP62 o--a
ENSG00000108559 NUP88 NonAssociatedWithProgression
ENSG00000110713 NUP98 o--a
ENSG00000102898 NUTF2 --o
ENSG00000132661 NXT1 o--b
ENSG00000128699 ORMDL1 o++b
ENSG00000143799 PARP1 o--b
ENSG00000160613 PCSK7 o--a
ENSG00000165195 PIGA NonAssociatedWithProgression
ENSG00000069943 PIGB o++b
ENSG00000135845 PIGC oo+
ENSG00000151665 PIGF -+o
ENSG00000142892 PIGK -+o
ENSG00000165282 PIGO ---
ENSG00000087111 PIGS o-o
ENSG00000124155 PIGT o--b
ENSG00000101464 PIGU o--a
ENSG00000060642 PIGV NonAssociatedWithProgression
ENSG00000145337 PIGY o+-
ENSG00000102007 PLP2 o--a
ENSG00000101868 POLA1 NonAssociatedWithProgression
ENSG00000130714 POMT1 o++b
ENSG00000080815 PSEN1 o-o
ENSG00000116260 QSOX1 o-+
ENSG00000119396 RAB14 -o-
ENSG00000169750 RAC3 ---
ENSG00000101146 RAE1 -o-
ENSG00000153201 RANBP2 o+o
ENSG00000100401 RANGAP1 o-o
ENSG00000157916 RER1 -+o
ENSG00000042445 RETSAT oo+
ENSG00000126858 RHOT1 NonAssociatedWithProgression
ENSG00000140983 RHOT2 o--b
ENSG00000163902 RPN1 o-o
ENSG00000118705 RPN2 o--a
ENSG00000115310 RTN4 +oo
ENSG00000136193 SCRN1 --o
ENSG00000121542 SEC22A -o-
ENSG00000163904 SENP2 o--a
ENSG00000111897 SERINC1 o-+
ENSG00000169359 SLC33A1 o++b
ENSG00000198689 SLC9A6 NonAssociatedWithProgression
ENSG00000114902 SPCS1 o-o
ENSG00000072310 SREBF1 o--a
ENSG00000143742 SRP9 NonAssociatedWithProgression
ENSG00000182934 SRPR o--a
ENSG00000134910 STT3A NonAssociatedWithProgression
ENSG00000163527 STT3B o--a
ENSG00000104915 STX10 o--a
ENSG00000116030 SUMO1 NonAssociatedWithProgression
ENSG00000231925 TAPBP ---
ENSG00000170348 TMED10 --o
ENSG00000086598 TMED2 +o+
ENSG00000058804 TMEM48 NonAssociatedWithProgression
ENSG00000120802 TMPO -o-
ENSG00000160183 TMPRSS3 NonAssociatedWithProgression
ENSG00000047410 TPR o+-
ENSG00000113595 TRIM23 o++b
ENSG00000204713 TRIM27 o--a
ENSG00000160803 UBQLN4 o--a
ENSG00000138768 USO1 NonAssociatedWithProgression
ENSG00000117533 VAMP4 o+-
ENSG00000124164 VAPB NonAssociatedWithProgression
ENSG00000146457 WTAP o-o
ENSG00000082898 XPO1 o-o
ENSG00000130227 XPO7 o--b