PEACHi
GeneSet CCACACA,MIR-147 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.4 0.04965 33.0 4.0 0.63
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000131473 ACLY o--a
ENSG00000006831 ADIPOR2 oo-
ENSG00000168710 AHCYL1 -+o
ENSG00000163399 ATP1A1 o--a
ENSG00000183337 BCOR o--a
ENSG00000234608 C12orf47 o--a
ENSG00000185127 C6orf120 o+o
ENSG00000171735 CAMTA1 o-o
ENSG00000146592 CREB5 +oo
ENSG00000005339 CREBBP NonAssociatedWithProgression
ENSG00000144677 CTDSPL o++b
ENSG00000119004 CYP20A1 oo-
ENSG00000117682 DHDDS -o-
ENSG00000132535 DLG4 ---
ENSG00000119772 DNMT3A o-o
ENSG00000089154 GCN1L1 o--a
ENSG00000143457 GOLPH3L NonAssociatedWithProgression
ENSG00000115677 HDLBP o--a
ENSG00000118263 KLF7 oo-
ENSG00000122696 MCART1 o++a
ENSG00000169057 MECP2 o--a
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000178403 NEUROG2 NonAssociatedWithProgression
ENSG00000102908 NFAT5 o--b
ENSG00000113580 NR3C1 o--a
ENSG00000120265 PCMT1 o++b
ENSG00000140992 PDPK1 -o-
ENSG00000143157 POGK o--a
ENSG00000137713 PPP2R1B o-+
ENSG00000185129 PURA ---
ENSG00000119318 RAD23B oo-
ENSG00000122707 RECK NonAssociatedWithProgression
ENSG00000138835 RGS3 o++a
ENSG00000108061 SHOC2 ---
ENSG00000070214 SLC44A1 o++a
ENSG00000077312 SNRPA o--a
ENSG00000124783 SSR1 -+o
ENSG00000163659 TIPARP NonAssociatedWithProgression
ENSG00000100106 TRIOBP +o+
ENSG00000165886 UBTD1 NonAssociatedWithProgression
ENSG00000112200 ZNF451 NonAssociatedWithProgression