PEACHi
GeneSet CATABOLIC_PROCESS (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o-o -2.9 0.04823 107.0 18.0 8.97
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000164163 ABCE1 NonAssociatedWithProgression
ENSG00000117054 ACADM o--b
ENSG00000122971 ACADS --o
ENSG00000072778 ACADVL o--b
ENSG00000131473 ACLY o--a
ENSG00000100412 ACO2 -oo
ENSG00000156709 AIFM1 NonAssociatedWithProgression
ENSG00000112294 ALDH5A1 o++b
ENSG00000149925 ALDOA o--b
ENSG00000159461 AMFR o-o
ENSG00000145020 AMT ---
ENSG00000164162 ANAPC10 o++b
ENSG00000176248 ANAPC2 NonAssociatedWithProgression
ENSG00000053900 ANAPC4 NonAssociatedWithProgression
ENSG00000089053 ANAPC5 o++a
ENSG00000166233 ARIH1 o--a
ENSG00000162174 ASRGL1 NonAssociatedWithProgression
ENSG00000148090 AUH NonAssociatedWithProgression
ENSG00000248098 BCKDHA o-o
ENSG00000083123 BCKDHB o++a
ENSG00000103507 BCKDK o--a
ENSG00000164039 BDH2 o++b
ENSG00000166167 BTRC --o
ENSG00000094880 CDC23 NonAssociatedWithProgression
ENSG00000170835 CEL o--a
ENSG00000172831 CES2 ---
ENSG00000110090 CPT1A --o
ENSG00000205560 CPT1B o--a
ENSG00000172115 CYCS o--b
ENSG00000136986 DERL1 NonAssociatedWithProgression
ENSG00000072849 DERL2 o-o
ENSG00000160049 DFFA NonAssociatedWithProgression
ENSG00000095059 DHPS o-o
ENSG00000122882 ECD +-o
ENSG00000104823 ECH1 o--a
ENSG00000127884 ECHS1 o--a
ENSG00000134109 EDEM1 o--b
ENSG00000171570 EGLN2 NonAssociatedWithProgression
ENSG00000197217 ENTPD4 NonAssociatedWithProgression
ENSG00000104884 ERCC2 ---
ENSG00000163161 ERCC3 o-o
ENSG00000175595 ERCC4 o-o
ENSG00000134899 ERCC5 NonAssociatedWithProgression
ENSG00000185104 FAF1 o--a
ENSG00000103876 FAH o-o
ENSG00000167196 FBXO22 NonAssociatedWithProgression
ENSG00000100225 FBXO7 o-o
ENSG00000171298 GAA o--a
ENSG00000128683 GAD1 -+o
ENSG00000070610 GBA2 o+o
ENSG00000102393 GLA ---
ENSG00000148672 GLUD1 o+o
ENSG00000113552 GNPDA1 o++a
ENSG00000135677 GNS o-o
ENSG00000120053 GOT1 NonAssociatedWithProgression
ENSG00000125166 GOT2 o--a
ENSG00000103342 GSPT1 NonAssociatedWithProgression
ENSG00000100577 GSTZ1 o-o
ENSG00000169919 GUSB ---
ENSG00000131373 HACL1 NonAssociatedWithProgression
ENSG00000138029 HADHB o-o
ENSG00000185359 HGS o--b
ENSG00000156515 HK1 ---
ENSG00000198189 HSD17B11 o-o
ENSG00000087076 HSD17B14 ---
ENSG00000025423 HSD17B6 -oo
ENSG00000204388 HSPA1B o--b
ENSG00000136813 KIAA0368 o+-
ENSG00000131844 MCCC2 ---
ENSG00000135679 MDM2 -o-
ENSG00000198625 MDM4 o-o
ENSG00000112992 NNT -+o
ENSG00000182446 NPLOC4 o--a
ENSG00000125458 NT5C o-o
ENSG00000065057 NTHL1 --o
ENSG00000112664 NUDT3 o--a
ENSG00000165609 NUDT5 --o
ENSG00000138430 OLA1 o+o
ENSG00000090621 PABPC4 o--a
ENSG00000081154 PCNP NonAssociatedWithProgression
ENSG00000168291 PDHB o+o
ENSG00000141959 PFKL o--b
ENSG00000152556 PFKM --o
ENSG00000142657 PGD NonAssociatedWithProgression
ENSG00000104356 POP1 o+o
ENSG00000186951 PPARA o++a
ENSG00000112033 PPARD ---
ENSG00000117751 PPP1R8 NonAssociatedWithProgression
ENSG00000131238 PPT1 +-o
ENSG00000117592 PRDX6 NonAssociatedWithProgression
ENSG00000087191 PSMC5 -+o
ENSG00000115233 PSMD14 o+o
ENSG00000100994 PYGB ---
ENSG00000169413 RNASE6 NonAssociatedWithProgression
ENSG00000171865 RNASEH1 o--b
ENSG00000104889 RNASEH2A o--b
ENSG00000123091 RNF11 o++b
ENSG00000137393 RNF144B o++b
ENSG00000073578 SDHA o-o
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000143252 SDHC o--b
ENSG00000204370 SDHD NonAssociatedWithProgression
ENSG00000196470 SIAH1 NonAssociatedWithProgression
ENSG00000181788 SIAH2 o-o
ENSG00000157106 SMG1 o+o
ENSG00000198952 SMG5 o--b
ENSG00000070366 SMG6 ---
ENSG00000116698 SMG7 ---
ENSG00000103056 SMPD3 o--b
ENSG00000142168 SOD1 NonAssociatedWithProgression
ENSG00000161011 SQSTM1 ---
ENSG00000103266 STUB1 ---
ENSG00000166340 TPP1 o--a
ENSG00000074319 TSG101 NonAssociatedWithProgression
ENSG00000170315 UBB ---
ENSG00000077721 UBE2A -o-
ENSG00000119048 UBE2B o+-
ENSG00000175063 UBE2C o-o
ENSG00000072401 UBE2D1 NonAssociatedWithProgression
ENSG00000131508 UBE2D2 --o
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000170142 UBE2E1 o--b
ENSG00000132388 UBE2G1 +-o
ENSG00000184787 UBE2G2 NonAssociatedWithProgression
ENSG00000186591 UBE2H NonAssociatedWithProgression
ENSG00000103275 UBE2I o--a
ENSG00000078140 UBE2K NonAssociatedWithProgression
ENSG00000185651 UBE2L3 o--b
ENSG00000177889 UBE2N o--a
ENSG00000169139 UBE2V2 o++b
ENSG00000114062 UBE3A NonAssociatedWithProgression
ENSG00000110344 UBE4A NonAssociatedWithProgression
ENSG00000130939 UBE4B o+o
ENSG00000144357 UBR3 NonAssociatedWithProgression
ENSG00000104517 UBR5 +oo
ENSG00000070010 UFD1L o+-
ENSG00000147854 UHRF2 o-o
ENSG00000151461 UPF2 NonAssociatedWithProgression
ENSG00000053501 USE1 NonAssociatedWithProgression
ENSG00000077254 USP33 o++b
ENSG00000165280 VCP o+-
ENSG00000088930 XRN2 NonAssociatedWithProgression
ENSG00000128245 YWHAH +-o
ENSG00000128016 ZFP36 o--b