PEACHi
GeneSet CAGCTG_V$AP4_Q5 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -4.0 0.01121 491.0 392.0 357.73
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000150967 ABCB9 o--a
ENSG00000164163 ABCE1 NonAssociatedWithProgression
ENSG00000100439 ABHD4 ---
ENSG00000138443 ABI2 o-o
ENSG00000097007 ABL1 o--a
ENSG00000099204 ABLIM1 -oo
ENSG00000159842 ABR oo+
ENSG00000166016 ABTB2 NonAssociatedWithProgression
ENSG00000068366 ACSL4 o+-
ENSG00000075624 ACTB o--b
ENSG00000173020 ADRBK1 o--b
ENSG00000241978 AKAP2 NonAssociatedWithProgression
ENSG00000127914 AKAP9 NonAssociatedWithProgression
ENSG00000053371 AKR7A2 o-o
ENSG00000142208 AKT1 ---
ENSG00000105221 AKT2 o--a
ENSG00000003393 ALS2 o++b
ENSG00000126016 AMOT NonAssociatedWithProgression
ENSG00000164162 ANAPC10 o++b
ENSG00000145362 ANK2 +oo
ENSG00000101745 ANKRD12 o++b
ENSG00000140350 ANP32A o--a
ENSG00000197043 ANXA6 o--a
ENSG00000182287 AP1S2 -+o
ENSG00000065000 AP3D1 o+o
ENSG00000034053 APBA2 o--b
ENSG00000113108 APBB3 o--b
ENSG00000142192 APP o++b
ENSG00000062725 APPBP2 o-o
ENSG00000168374 ARF4 o+o
ENSG00000116584 ARHGEF2 o--b
ENSG00000129675 ARHGEF6 ---
ENSG00000117713 ARID1A o--b
ENSG00000143437 ARNT o++b
ENSG00000171681 ATF7IP ---
ENSG00000159720 ATP6V0D1 o--a
ENSG00000114573 ATP6V1A NonAssociatedWithProgression
ENSG00000155097 ATP6V1C1 o++b
ENSG00000100554 ATP6V1D NonAssociatedWithProgression
ENSG00000156273 BACH1 +oo
ENSG00000112182 BACH2 +-o
ENSG00000175866 BAIAP2 NonAssociatedWithProgression
ENSG00000163930 BAP1 o--b
ENSG00000204427 BAT5 +o+
ENSG00000076108 BAZ2A o++b
ENSG00000141376 BCAS3 -oo
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000113916 BCL6 +-o
ENSG00000110987 BCL7A -o-
ENSG00000186174 BCL9L o--b
ENSG00000133134 BEX2 +o+
ENSG00000104081 BMF +-o
ENSG00000204217 BMPR2 NonAssociatedWithProgression
ENSG00000140299 BNIP2 NonAssociatedWithProgression
ENSG00000141867 BRD4 oo-
ENSG00000168000 BSCL2 ---
ENSG00000132640 BTBD3 o+o
ENSG00000133639 BTG1 NonAssociatedWithProgression
ENSG00000159388 BTG2 o-o
ENSG00000165813 C10orf118 o+o
ENSG00000166272 C10orf26 ---
ENSG00000047621 C12orf4 NonAssociatedWithProgression
ENSG00000087302 C14orf166 +o+
ENSG00000119669 C14orf4 NonAssociatedWithProgression
ENSG00000168675 C18orf1 o++a
ENSG00000197183 C20orf112 o++a
ENSG00000196227 C20orf177 o++b
ENSG00000204439 C6orf47 ---
ENSG00000112308 C6orf62 o-o
ENSG00000171159 C9orf16 o--a
ENSG00000063180 CA11 o-o
ENSG00000067191 CACNB1 ---
ENSG00000143933 CALM2 o--a
ENSG00000160014 CALM3 o--a
ENSG00000148660 CAMK2G o+o
ENSG00000147044 CASK o++b
ENSG00000153113 CAST o+o
ENSG00000078699 CBFA2T2 o--a
ENSG00000129993 CBFA2T3 NonAssociatedWithProgression
ENSG00000183741 CBX6 o--b
ENSG00000175305 CCNE2 NonAssociatedWithProgression
ENSG00000107443 CCNJ o--b
ENSG00000196776 CD47 NonAssociatedWithProgression
ENSG00000137101 CD72 o-o
ENSG00000010278 CD9 o-o
ENSG00000102181 CD99L2 o--a
ENSG00000101224 CDC25B o--a
ENSG00000163171 CDC42EP3 NonAssociatedWithProgression
ENSG00000111665 CDCA3 o--a
ENSG00000123374 CDK2 oo-
ENSG00000164885 CDK5 ---
ENSG00000111276 CDKN1B +o+
ENSG00000123080 CDKN2C o-o
ENSG00000100526 CDKN3 NonAssociatedWithProgression
ENSG00000111642 CHD4 o--b
ENSG00000072609 CHFR o-o
ENSG00000123989 CHPF ---
ENSG00000164442 CITED2 o++b
ENSG00000106404 CLDN15 o--b
ENSG00000148842 CNNM2 ---
ENSG00000173786 CNP ---
ENSG00000114270 COL7A1 NonAssociatedWithProgression
ENSG00000148444 COMMD3 -+o
ENSG00000107864 CPEB3 o++b
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000095794 CREM o+o
ENSG00000133275 CSNK1G2 ---
ENSG00000117984 CTSD NonAssociatedWithProgression
ENSG00000178531 CTXN1 NonAssociatedWithProgression
ENSG00000044090 CUL7 ---
ENSG00000168772 CXXC4 +o+
ENSG00000100592 DAAM1 o++b
ENSG00000198924 DCLRE1A o-o
ENSG00000204843 DCTN1 ---
ENSG00000168209 DDIT4 o+-
ENSG00000100201 DDX17 NonAssociatedWithProgression
ENSG00000108654 DDX5 NonAssociatedWithProgression
ENSG00000176124 DLEU1 -o-
ENSG00000231607 DLEU2 oo-
ENSG00000104936 DMPK ---
ENSG00000135164 DMTF1 NonAssociatedWithProgression
ENSG00000086061 DNAJA1 ---
ENSG00000136770 DNAJC1 NonAssociatedWithProgression
ENSG00000149927 DOC2A --o
ENSG00000130158 DOCK6 ---
ENSG00000088387 DOCK9 o++a
ENSG00000133884 DPF2 o-o
ENSG00000142002 DPP9 o--b
ENSG00000185721 DRG1 NonAssociatedWithProgression
ENSG00000178498 DTX3 o-o
ENSG00000120129 DUSP1 o--a
ENSG00000120875 DUSP4 ---
ENSG00000161202 DVL3 o--a
ENSG00000101412 E2F1 o--b
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000117395 EBNA1BP2 NonAssociatedWithProgression
ENSG00000107223 EDF1 o--b
ENSG00000169242 EFNA1 oo+
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000134001 EIF2S1 o--a
ENSG00000184708 EIF4ENIF1 o-o
ENSG00000110321 EIF4G2 o+-
ENSG00000105656 ELL o--a
ENSG00000109911 ELP4 NonAssociatedWithProgression
ENSG00000142227 EMP3 o--b
ENSG00000105722 ERF ---
ENSG00000100632 ERH NonAssociatedWithProgression
ENSG00000173153 ESRRA ---
ENSG00000120705 ETF1 o--a
ENSG00000134954 ETS1 NonAssociatedWithProgression
ENSG00000244405 ETV5 +-o
ENSG00000012232 EXTL3 o-o
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000090920 FCGBP o++a
ENSG00000182511 FES NonAssociatedWithProgression
ENSG00000000938 FGR o--b
ENSG00000114861 FOXP1 oo-
ENSG00000114416 FXR1 ---
ENSG00000033327 GAB2 +o+
ENSG00000007237 GAS7 ---
ENSG00000107485 GATA3 o+o
ENSG00000162676 GFI1 o-o
ENSG00000063169 GLTSCR1 ---
ENSG00000172354 GNB2 ---
ENSG00000147533 GOLGA7 o--a
ENSG00000144230 GPR17 o-+
ENSG00000233276 GPX1 ---
ENSG00000198873 GRK5 +oo
ENSG00000082701 GSK3B -o-
ENSG00000172432 GTPBP2 o--a
ENSG00000189060 H1F0 o--b
ENSG00000164032 H2AFZ o-o
ENSG00000163517 HDAC11 -oo
ENSG00000068024 HDAC4 o--b
ENSG00000144485 HES6 ---
ENSG00000100644 HIF1A NonAssociatedWithProgression
ENSG00000196226 HIST1H2BB o--b
ENSG00000197409 HIST1H3D +-o
ENSG00000127124 HIVEP3 +-o
ENSG00000149948 HMGA2 oo-
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000189159 HN1 o-+
ENSG00000152795 HNRPDL oo-
ENSG00000174775 HRAS o--b
ENSG00000204228 HSD17B8 o--b
ENSG00000125968 ID1 o--a
ENSG00000117318 ID3 ---
ENSG00000182054 IDH2 NonAssociatedWithProgression
ENSG00000140443 IGF1R o++b
ENSG00000137070 IL11RA NonAssociatedWithProgression
ENSG00000106348 IMPDH1 o--a
ENSG00000165458 INPPL1 ---
ENSG00000171105 INSR +o+
ENSG00000091409 ITGA6 NonAssociatedWithProgression
ENSG00000147166 ITGB1BP2 -o-
ENSG00000096433 ITPR3 o-o
ENSG00000205726 ITSN1 -+o
ENSG00000171988 JMJD1C +oo
ENSG00000104369 JPH1 NonAssociatedWithProgression
ENSG00000055118 KCNH2 -oo
ENSG00000185760 KCNQ5 o++a
ENSG00000214655 KIAA0913 ---
ENSG00000054523 KIF1B o++a
ENSG00000090889 KIF4A NonAssociatedWithProgression
ENSG00000126259 KIRREL2 ---
ENSG00000118922 KLF12 o+o
ENSG00000169926 KLF13 oo-
ENSG00000102554 KLF5 o-+
ENSG00000165516 KLHDC2 NonAssociatedWithProgression
ENSG00000167748 KLK1 +-o
ENSG00000163463 KRTCAP2 o-o
ENSG00000213658 LAT NonAssociatedWithProgression
ENSG00000182866 LCK o-o
ENSG00000138795 LEF1 -o-
ENSG00000161904 LEMD2 o--a
ENSG00000182909 LENG9 ---
ENSG00000110811 LEPREL2 ---
ENSG00000182541 LIMK2 o--a
ENSG00000143013 LMO4 -+o
ENSG00000139517 LNX2 NonAssociatedWithProgression
ENSG00000165714 LOH12CR1 +o+
ENSG00000198589 LRBA ---
ENSG00000136141 LRCH1 o--b
ENSG00000077454 LRCH4 ---
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000162337 LRP5 NonAssociatedWithProgression
ENSG00000175928 LRRN1 o+o
ENSG00000226979 LTA NonAssociatedWithProgression
ENSG00000049323 LTBP1 -oo
ENSG00000007392 LUC7L o--b
ENSG00000179222 MAGED1 NonAssociatedWithProgression
ENSG00000111885 MAN1A1 o++a
ENSG00000104774 MAN2B1 o--a
ENSG00000109323 MANBA o++b
ENSG00000166963 MAP1A o--b
ENSG00000137764 MAP2K5 o--a
ENSG00000073803 MAP3K13 o++a
ENSG00000198909 MAP3K3 o-+
ENSG00000197442 MAP3K5 o++a
ENSG00000107968 MAP3K8 o++a
ENSG00000072518 MARK2 ---
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000139793 MBNL2 NonAssociatedWithProgression
ENSG00000076706 MCAM o-o
ENSG00000090674 MCOLN1 ---
ENSG00000110492 MDK NonAssociatedWithProgression
ENSG00000135679 MDM2 -o-
ENSG00000116604 MEF2D o--b
ENSG00000134138 MEIS2 o++b
ENSG00000140406 MESDC1 +oo
ENSG00000100060 MFNG o--a
ENSG00000187098 MITF o--b
ENSG00000118058 MLL o--a
ENSG00000103150 MLYCD NonAssociatedWithProgression
ENSG00000142961 MOBKL2C oo+
ENSG00000101928 MOSPD1 o+o
ENSG00000243927 MRPS6 o+o
ENSG00000085760 MTIF2 -+o
ENSG00000108389 MTMR4 NonAssociatedWithProgression
ENSG00000119950 MXI1 +-o
ENSG00000179820 MYADM oo-
ENSG00000101057 MYBL2 o--b
ENSG00000136997 MYC o--b
ENSG00000214114 MYCBP -oo
ENSG00000109063 MYH3 NonAssociatedWithProgression
ENSG00000133454 MYO18B -o-
ENSG00000197879 MYO1C ---
ENSG00000196531 NACA NonAssociatedWithProgression
ENSG00000108784 NAGLU ---
ENSG00000125814 NAPB o++a
ENSG00000172915 NBEA -+o
ENSG00000020129 NCDN NonAssociatedWithProgression
ENSG00000104419 NDRG1 o--b
ENSG00000166507 NDST2 o-o
ENSG00000189043 NDUFA4 -+o
ENSG00000069869 NEDD4 -+o
ENSG00000160949 NFKBIL2 ---
ENSG00000196865 NHLRC2 NonAssociatedWithProgression
ENSG00000125820 NKX2-2 o-+
ENSG00000196338 NLGN3 +o+
ENSG00000142546 NOSIP o--a
ENSG00000148400 NOTCH1 o+o
ENSG00000131697 NPHP4 ---
ENSG00000102898 NUTF2 --o
ENSG00000182379 NXPH4 NonAssociatedWithProgression
ENSG00000114026 OGG1 o--a
ENSG00000135124 P2RX4 --o
ENSG00000083454 P2RX5 o--b
ENSG00000128050 PAICS NonAssociatedWithProgression
ENSG00000145730 PAM oo+
ENSG00000115687 PASK o++b
ENSG00000163346 PBXIP1 o--b
ENSG00000197111 PCBP2 o--a
ENSG00000090097 PCBP4 o-o
ENSG00000165494 PCF11 oo-
ENSG00000100731 PCNX NonAssociatedWithProgression
ENSG00000112541 PDE10A o++b
ENSG00000205268 PDE7A ---
ENSG00000120913 PDLIM2 ---
ENSG00000124299 PEPD o--b
ENSG00000112511 PHF1 o--b
ENSG00000010318 PHF7 NonAssociatedWithProgression
ENSG00000067177 PHKA1 o++a
ENSG00000073921 PICALM +o+
ENSG00000197563 PIGN --o
ENSG00000105851 PIK3CG o++b
ENSG00000198961 PJA2 o--a
ENSG00000137841 PLCB2 o-+
ENSG00000140464 PML o-o
ENSG00000176903 PNMA1 +oo
ENSG00000175482 POLD4 --o
ENSG00000186184 POLR1D o--a
ENSG00000152192 POU4F1 oo+
ENSG00000128059 PPAT NonAssociatedWithProgression
ENSG00000100614 PPM1A o--a
ENSG00000175175 PPM1E -oo
ENSG00000101445 PPP1R16B o++a
ENSG00000115685 PPP1R7 o--a
ENSG00000108819 PPP1R9B -+o
ENSG00000078304 PPP2R5C NonAssociatedWithProgression
ENSG00000154001 PPP2R5E o-o
ENSG00000138814 PPP3CA o++b
ENSG00000107758 PPP3CB o+-
ENSG00000162409 PRKAA2 o++a
ENSG00000072062 PRKACA ---
ENSG00000065675 PRKCQ o+o
ENSG00000185246 PRPF39 NonAssociatedWithProgression
ENSG00000164985 PSIP1 o-o
ENSG00000108344 PSMD3 ---
ENSG00000117425 PTCH2 -+o
ENSG00000112655 PTK7 o--a
ENSG00000196396 PTPN1 +oo
ENSG00000185129 PURA ---
ENSG00000151576 QTRTD1 NonAssociatedWithProgression
ENSG00000169228 RAB24 o-+
ENSG00000069974 RAB27A o++b
ENSG00000105649 RAB3A NonAssociatedWithProgression
ENSG00000111540 RAB5B o--b
ENSG00000105404 RABAC1 o--a
ENSG00000182185 RAD51L1 ---
ENSG00000185379 RAD51L3 o--b
ENSG00000166349 RAG1 ---
ENSG00000108557 RAI1 o--b
ENSG00000068028 RASSF1 o--a
ENSG00000101265 RASSF2 o++a
ENSG00000102054 RBBP7 o-o
ENSG00000167771 RCOR2 NonAssociatedWithProgression
ENSG00000121039 RDH10 NonAssociatedWithProgression
ENSG00000173039 RELA o--a
ENSG00000135597 REPS1 ---
ENSG00000145331 RG9MTD2 -+o
ENSG00000182732 RGS6 o++a
ENSG00000008853 RHOBTB2 NonAssociatedWithProgression
ENSG00000143622 RIT1 o+o
ENSG00000157450 RNF111 o++b
ENSG00000082996 RNF13 o++b
ENSG00000013561 RNF14 NonAssociatedWithProgression
ENSG00000158717 RNF166 ---
ENSG00000067900 ROCK1 o+o
ENSG00000143365 RORC o--b
ENSG00000106399 RPA3 o++b
ENSG00000108107 RPL28 o--b
ENSG00000108443 RPS6KB1 NonAssociatedWithProgression
ENSG00000114993 RTKN NonAssociatedWithProgression
ENSG00000125744 RTN2 o--a
ENSG00000176783 RUFY1 --o
ENSG00000198863 RUNDC1 NonAssociatedWithProgression
ENSG00000159216 RUNX1 o--b
ENSG00000020633 RUNX3 o--b
ENSG00000163785 RYK --o
ENSG00000196754 S100A2 +o+
ENSG00000198794 SCAMP5 ---
ENSG00000114650 SCAP ---
ENSG00000092108 SCFD1 o-o
ENSG00000136193 SCRN1 --o
ENSG00000110876 SELPLG ---
ENSG00000138623 SEMA7A o--a
ENSG00000100167 SEPT3 NonAssociatedWithProgression
ENSG00000140264 SERF2 ---
ENSG00000106366 SERPINE1 o+-
ENSG00000119335 SET o--b
ENSG00000142669 SH3BGRL3 o--b
ENSG00000100092 SH3BP1 --o
ENSG00000177045 SIX5 NonAssociatedWithProgression
ENSG00000064651 SLC12A2 o-o
ENSG00000115902 SLC1A4 NonAssociatedWithProgression
ENSG00000092096 SLC22A17 ---
ENSG00000144741 SLC25A26 +-o
ENSG00000176087 SLC35A4 NonAssociatedWithProgression
ENSG00000080189 SLC35C2 ---
ENSG00000029364 SLC39A9 NonAssociatedWithProgression
ENSG00000134802 SLC43A3 o--a
ENSG00000164889 SLC4A2 -o-
ENSG00000151012 SLC7A11 +oo
ENSG00000080503 SMARCA2 NonAssociatedWithProgression
ENSG00000138375 SMARCAL1 -+o
ENSG00000124766 SOX4 +oo
ENSG00000090487 SPG21 --o
ENSG00000107742 SPOCK2 +o+
ENSG00000121067 SPOP o--b
ENSG00000187678 SPRY4 +-o
ENSG00000197694 SPTAN1 NonAssociatedWithProgression
ENSG00000115306 SPTBN1 oo-
ENSG00000112658 SRF o+-
ENSG00000100883 SRP54 -+o
ENSG00000117155 SSX2IP -o-
ENSG00000185482 STAC3 NonAssociatedWithProgression
ENSG00000168610 STAT3 o--b
ENSG00000126561 STAT5A o-o
ENSG00000173757 STAT5B ---
ENSG00000165283 STOML2 ---
ENSG00000188612 SUMO2 NonAssociatedWithProgression
ENSG00000092201 SUPT16H o--a
ENSG00000196235 SUPT5H o--b
ENSG00000159164 SV2A o--a
ENSG00000197321 SVIL o++b
ENSG00000147526 TACC1 o+o
ENSG00000102125 TAZ o-+
ENSG00000124659 TBCC o--a
ENSG00000140262 TCF12 o--a
ENSG00000081059 TCF7 o+-
ENSG00000167074 TEF ---
ENSG00000087510 TFAP2C o--a
ENSG00000090447 TFAP4 o--b
ENSG00000114126 TFDP2 o--b
ENSG00000163513 TGFBR2 +o+
ENSG00000118707 TGIF2 ---
ENSG00000106829 TLE4 NonAssociatedWithProgression
ENSG00000149582 TMEM25 -+o
ENSG00000144747 TMF1 o+o
ENSG00000117586 TNFSF4 o++a
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000078902 TOLLIP o-o
ENSG00000067369 TP53BP1 o+o
ENSG00000078804 TP53INP2 NonAssociatedWithProgression
ENSG00000186815 TPCN1 --o
ENSG00000111669 TPI1 o-o
ENSG00000198467 TPM2 ---
ENSG00000143549 TPM3 oo-
ENSG00000137364 TPMT o+o
ENSG00000131323 TRAF3 -+o
ENSG00000067167 TRAM1 NonAssociatedWithProgression
ENSG00000054116 TRAPPC3 o++a
ENSG00000124496 TRERF1 --o
ENSG00000204599 TRIM39 oo-
ENSG00000163462 TRIM46 -oo
ENSG00000100815 TRIP11 o++b
ENSG00000043514 TRIT1 o+-
ENSG00000196689 TRPV1 o++a
ENSG00000104833 TUBB4 ---
ENSG00000037042 TUBG2 o-+
ENSG00000114383 TUSC2 +-o
ENSG00000136810 TXN o++b
ENSG00000119048 UBE2B o+-
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000186591 UBE2H NonAssociatedWithProgression
ENSG00000108312 UBTF o--a
ENSG00000120686 UFM1 NonAssociatedWithProgression
ENSG00000109103 UNC119 --o
ENSG00000162607 USP1 o--b
ENSG00000058056 USP13 ---
ENSG00000140455 USP3 oo-
ENSG00000170832 USP32 NonAssociatedWithProgression
ENSG00000111667 USP5 ---
ENSG00000139190 VAMP1 o++b
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000118640 VAMP8 NonAssociatedWithProgression
ENSG00000108828 VAT1 o--b
ENSG00000128564 VGF NonAssociatedWithProgression
ENSG00000104142 VPS18 o--a
ENSG00000120688 WBP4 +o+
ENSG00000085449 WDFY1 o-o
ENSG00000142784 WDTC1 -o-
ENSG00000100219 XBP1 -+o
ENSG00000108039 XPNPEP1 o++b
ENSG00000143324 XPR1 -+o
ENSG00000134684 YARS o--b
ENSG00000198492 YTHDF2 o--a
ENSG00000164924 YWHAZ o--b
ENSG00000177485 ZBTB33 NonAssociatedWithProgression
ENSG00000185650 ZFP36L1 o-o
ENSG00000165861 ZFYVE1 NonAssociatedWithProgression
ENSG00000072121 ZFYVE26 o++b
ENSG00000125846 ZNF133 o++a
ENSG00000167840 ZNF232 NonAssociatedWithProgression
ENSG00000179456 ZNF238 o-o
ENSG00000198839 ZNF277 o+-
ENSG00000126746 ZNF384 o+o
ENSG00000197024 ZNF398 o-o
ENSG00000165655 ZNF503 -+o
ENSG00000019995 ZRANB1 NonAssociatedWithProgression