PEACHi
GeneSet ACTIVE_TRANSMEMBRANE_TRANSPORTER_ACTIVITY (GO_-_Molecular_Function.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -3.0 0.03452 42.0 13.0 5.8
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000131269 ABCB7 o-o
ENSG00000117528 ABCD3 NonAssociatedWithProgression
ENSG00000119688 ABCD4 NonAssociatedWithProgression
ENSG00000204574 ABCF1 o--b
ENSG00000160179 ABCG1 --o
ENSG00000154122 ANKH o--b
ENSG00000058063 ATP11B NonAssociatedWithProgression
ENSG00000163399 ATP1A1 o--a
ENSG00000143153 ATP1B1 -oo
ENSG00000069849 ATP1B3 o--b
ENSG00000174437 ATP2A2 -o-
ENSG00000074370 ATP2A3 o--b
ENSG00000070961 ATP2B1 +-o
ENSG00000058668 ATP2B4 o++b
ENSG00000017260 ATP2C1 oo-
ENSG00000185883 ATP6V0C o--b
ENSG00000113732 ATP6V0E1 o--b
ENSG00000147416 ATP6V1B2 o-o
ENSG00000155097 ATP6V1C1 o++b
ENSG00000165240 ATP7A o++b
ENSG00000123191 ATP7B o++b
ENSG00000040531 CTNS --o
ENSG00000137731 FXYD2 o-+
ENSG00000106803 SEC61B o++a
ENSG00000111897 SERINC1 o-+
ENSG00000064651 SLC12A2 o-o
ENSG00000113504 SLC12A7 o--b
ENSG00000119899 SLC17A5 +o+
ENSG00000115902 SLC1A4 NonAssociatedWithProgression
ENSG00000105281 SLC1A5 o--b
ENSG00000144136 SLC20A1 o-o
ENSG00000168575 SLC20A2 o--b
ENSG00000108528 SLC25A11 ---
ENSG00000115840 SLC25A12 o++a
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000177542 SLC25A22 NonAssociatedWithProgression
ENSG00000168003 SLC3A2 +-o
ENSG00000149150 SLC43A1 o--b
ENSG00000070214 SLC44A1 o++a
ENSG00000129353 SLC44A2 NonAssociatedWithProgression
ENSG00000080493 SLC4A4 -+o
ENSG00000198743 SLC5A3 NonAssociatedWithProgression
ENSG00000138074 SLC5A6 ---
ENSG00000131389 SLC6A6 o+o
ENSG00000151012 SLC7A11 +oo
ENSG00000103257 SLC7A5 o--b
ENSG00000103064 SLC7A6 o--b
ENSG00000090020 SLC9A1 o--b
ENSG00000198689 SLC9A6 NonAssociatedWithProgression
ENSG00000065923 SLC9A7 -+o
ENSG00000231925 TAPBP ---