PEACHi
GeneSet ACTGCCT,MIR-34B (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--b -3.8 0.03976 101.0 27.0 13.95
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000132142 ACACA o--b
ENSG00000151726 ACSL1 NonAssociatedWithProgression
ENSG00000136518 ACTL6A o--a
ENSG00000138107 ACTR1A ---
ENSG00000128271 ADORA2A o--a
ENSG00000121057 AKAP1 o--b
ENSG00000170017 ALCAM o++b
ENSG00000145362 ANK2 +oo
ENSG00000101745 ANKRD12 o++b
ENSG00000100280 AP1B1 o--b
ENSG00000042753 AP2S1 o--b
ENSG00000185009 AP3M1 o--a
ENSG00000175220 ARHGAP1 NonAssociatedWithProgression
ENSG00000049618 ARID1B o+o
ENSG00000189079 ARID2 NonAssociatedWithProgression
ENSG00000054267 ARID4B o-o
ENSG00000165997 ARL5B NonAssociatedWithProgression
ENSG00000113369 ARRDC3 NonAssociatedWithProgression
ENSG00000101974 ATP11C o++b
ENSG00000069849 ATP1B3 o--b
ENSG00000125375 ATP5S o++b
ENSG00000168488 ATXN2L ---
ENSG00000186174 BCL9L o--b
ENSG00000183336 BOLA2 oo+
ENSG00000141867 BRD4 oo-
ENSG00000159388 BTG2 o-o
ENSG00000156030 C14orf43 o--a
ENSG00000094975 C1orf9 NonAssociatedWithProgression
ENSG00000149639 C20orf117 NonAssociatedWithProgression
ENSG00000164970 C9orf25 NonAssociatedWithProgression
ENSG00000007402 CACNA2D2 NonAssociatedWithProgression
ENSG00000105810 CDK6 o--a
ENSG00000008300 CELSR3 ---
ENSG00000080802 CNOT4 ---
ENSG00000113300 CNOT6 +-o
ENSG00000107864 CPEB3 o++b
ENSG00000118260 CREB1 o+-
ENSG00000100592 DAAM1 o++b
ENSG00000108406 DHX40 oo-
ENSG00000151240 DIP2C NonAssociatedWithProgression
ENSG00000066044 ELAVL1 NonAssociatedWithProgression
ENSG00000109381 ELF2 NonAssociatedWithProgression
ENSG00000113719 ERGIC1 o--a
ENSG00000173153 ESRRA ---
ENSG00000134954 ETS1 NonAssociatedWithProgression
ENSG00000142459 EVI5L NonAssociatedWithProgression
ENSG00000154864 FAM38B -oo
ENSG00000153310 FAM49B o+o
ENSG00000132589 FLOT2 o--a
ENSG00000065970 FOXJ2 NonAssociatedWithProgression
ENSG00000114861 FOXP1 oo-
ENSG00000151474 FRMD4A o++b
ENSG00000138604 GLCE o++a
ENSG00000107521 HPS1 NonAssociatedWithProgression
ENSG00000003147 ICA1 NonAssociatedWithProgression
ENSG00000205726 ITSN1 -+o
ENSG00000153814 JAZF1 ---
ENSG00000168502 KIAA0802 o-+
ENSG00000118922 KLF12 o+o
ENSG00000143418 LASS2 o--b
ENSG00000114988 LMAN2L o--b
ENSG00000072071 LPHN1 ---
ENSG00000070018 LRP6 NonAssociatedWithProgression
ENSG00000151276 MAGI1 o+o
ENSG00000166963 MAP1A o--b
ENSG00000100030 MAPK1 NonAssociatedWithProgression
ENSG00000198060 MARCH5 o-o
ENSG00000145495 MARCH6 o-o
ENSG00000168906 MAT2A ---
ENSG00000169057 MECP2 o--a
ENSG00000187098 MITF o--b
ENSG00000171843 MLLT3 oo+
ENSG00000173542 MOBKL1A NonAssociatedWithProgression
ENSG00000101928 MOSPD1 o+o
ENSG00000172590 MRPL52 oo+
ENSG00000147649 MTDH o--b
ENSG00000118513 MYB o-+
ENSG00000136997 MYC o--b
ENSG00000005810 MYCBP2 -+o
ENSG00000070614 NDST1 NonAssociatedWithProgression
ENSG00000102908 NFAT5 o--b
ENSG00000148400 NOTCH1 o+o
ENSG00000108256 NUFIP2 --o
ENSG00000122126 OCRL o++a
ENSG00000009694 ODZ1 o+-
ENSG00000149269 PAK1 oo+
ENSG00000090060 PAPOLA NonAssociatedWithProgression
ENSG00000115421 PAPOLG o++b
ENSG00000165494 PCF11 oo-
ENSG00000043143 PHF15 o--b
ENSG00000107679 PLEKHA1 +o+
ENSG00000152192 POU4F1 oo+
ENSG00000186298 PPP1CC o--b
ENSG00000204569 PPP1R10 o--b
ENSG00000066027 PPP2R5A o--b
ENSG00000204576 PRR3 o--b
ENSG00000112655 PTK7 o--a
ENSG00000144724 PTPRG NonAssociatedWithProgression
ENSG00000146676 PURB o--a
ENSG00000084733 RAB10 NonAssociatedWithProgression
ENSG00000119396 RAB14 -o-
ENSG00000006451 RALA o-+
ENSG00000116191 RALGPS2 oo+
ENSG00000141084 RANBP10 -+o
ENSG00000244462 RBM12 o--b
ENSG00000137710 RDX NonAssociatedWithProgression
ENSG00000111785 RIC8B NonAssociatedWithProgression
ENSG00000063978 RNF4 NonAssociatedWithProgression
ENSG00000162302 RPS6KA4 o--b
ENSG00000108443 RPS6KB1 NonAssociatedWithProgression
ENSG00000143252 SDHC o--b
ENSG00000161956 SENP3 o--b
ENSG00000124766 SOX4 +oo
ENSG00000198648 STK39 o--b
ENSG00000165209 STRBP --o
ENSG00000100321 SYNGR1 oo+
ENSG00000140262 TCF12 o--a
ENSG00000107140 TESK1 NonAssociatedWithProgression
ENSG00000114126 TFDP2 o--b
ENSG00000103978 TMEM87A NonAssociatedWithProgression
ENSG00000198846 TOX +-o
ENSG00000109654 TRIM2 o+o
ENSG00000147854 UHRF2 o-o
ENSG00000220205 VAMP2 o--b
ENSG00000049245 VAMP3 NonAssociatedWithProgression
ENSG00000112290 WASF1 NonAssociatedWithProgression
ENSG00000149658 YTHDF1 o--a
ENSG00000164924 YWHAZ o--b
ENSG00000084073 ZMPSTE24 NonAssociatedWithProgression
ENSG00000147130 ZMYM3 --o
ENSG00000163848 ZNF148 NonAssociatedWithProgression
ENSG00000010244 ZNF207 NonAssociatedWithProgression
ENSG00000170265 ZNF282 o--b
ENSG00000166526 ZNF3 ---
ENSG00000213015 ZNF580 o--a
ENSG00000036549 ZZZ3 o+-