PEACHi
GeneSet AATGTGA,MIR-23A,MIR-23B (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+-o -5.5 0.01038 163.0 17.0 5.1
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000049192 ADAMTS6 o++a
ENSG00000173020 ADRBK1 o--b
ENSG00000172493 AFF1 +-o
ENSG00000131016 AKAP12 NonAssociatedWithProgression
ENSG00000101935 AMMECR1 o--b
ENSG00000131503 ANKHD1 o--b
ENSG00000151458 ANKRD50 NonAssociatedWithProgression
ENSG00000165527 ARF6 NonAssociatedWithProgression
ENSG00000164144 ARFIP1 o++b
ENSG00000159314 ARHGAP27 o--b
ENSG00000111875 ASF1A NonAssociatedWithProgression
ENSG00000058063 ATP11B NonAssociatedWithProgression
ENSG00000147416 ATP6V1B2 o-o
ENSG00000131100 ATP6V1E1 NonAssociatedWithProgression
ENSG00000124788 ATXN1 oo+
ENSG00000148090 AUH NonAssociatedWithProgression
ENSG00000158321 AUTS2 o++b
ENSG00000155096 AZIN1 NonAssociatedWithProgression
ENSG00000119866 BCL11A ---
ENSG00000127152 BCL11B NonAssociatedWithProgression
ENSG00000105829 BET1 NonAssociatedWithProgression
ENSG00000166619 BLCAP NonAssociatedWithProgression
ENSG00000104765 BNIP3L NonAssociatedWithProgression
ENSG00000185658 BRWD1 NonAssociatedWithProgression
ENSG00000095564 BTAF1 NonAssociatedWithProgression
ENSG00000011114 BTBD7 NonAssociatedWithProgression
ENSG00000151135 C12orf23 -+o
ENSG00000173065 C17orf63 o--b
ENSG00000094975 C1orf9 NonAssociatedWithProgression
ENSG00000135932 CAB39 +o+
ENSG00000171735 CAMTA1 o-o
ENSG00000165806 CASP7 o-o
ENSG00000078699 CBFA2T2 o--a
ENSG00000129993 CBFA2T3 NonAssociatedWithProgression
ENSG00000060339 CCAR1 o--b
ENSG00000108091 CCDC6 o+-
ENSG00000113328 CCNG1 +o+
ENSG00000134480 CCNH -o-
ENSG00000082258 CCNT2 o-o
ENSG00000168438 CDC40 -oo
ENSG00000176749 CDK5R1 NonAssociatedWithProgression
ENSG00000153774 CFDP1 o-o
ENSG00000171316 CHD7 o++b
ENSG00000115526 CHST10 o--a
ENSG00000147119 CHST7 NonAssociatedWithProgression
ENSG00000213341 CHUK NonAssociatedWithProgression
ENSG00000136425 CIB2 o--a
ENSG00000157224 CLDN12 +o+
ENSG00000179335 CLK3 o--a
ENSG00000204248 COL11A2 --o
ENSG00000188153 COL4A5 -oo
ENSG00000113742 CPEB4 NonAssociatedWithProgression
ENSG00000160917 CPSF4 o--b
ENSG00000167193 CRK o+o
ENSG00000169118 CSNK1G1 o--a
ENSG00000151292 CSNK1G3 o++b
ENSG00000070770 CSNK2A2 o-o
ENSG00000102974 CTCF o--b
ENSG00000036257 CUL3 o--a
ENSG00000109606 DHX15 +-o
ENSG00000151240 DIP2C NonAssociatedWithProgression
ENSG00000172869 DMXL1 +-o
ENSG00000116675 DNAJC6 o++a
ENSG00000197959 DNM3 o++b
ENSG00000138166 DUSP5 +-o
ENSG00000171570 EGLN2 NonAssociatedWithProgression
ENSG00000109381 ELF2 NonAssociatedWithProgression
ENSG00000085832 EPS15 +-o
ENSG00000026103 FAS NonAssociatedWithProgression
ENSG00000138081 FBXO11 +o+
ENSG00000102081 FMR1 o+-
ENSG00000137942 FNBP1L o++a
ENSG00000125740 FOSB +-o
ENSG00000164916 FOXK1 +-o
ENSG00000196371 FUT4 NonAssociatedWithProgression
ENSG00000138757 G3BP2 NonAssociatedWithProgression
ENSG00000179562 GCC1 ---
ENSG00000138604 GLCE o++a
ENSG00000115419 GLS o--b
ENSG00000062194 GPBP1 ---
ENSG00000198873 GRK5 +oo
ENSG00000164104 HMGB2 o--b
ENSG00000198830 HMGN2 NonAssociatedWithProgression
ENSG00000095066 HOOK2 NonAssociatedWithProgression
ENSG00000182742 HOXB4 NonAssociatedWithProgression
ENSG00000071243 ING3 o--b
ENSG00000068383 INPP5A -o-
ENSG00000125347 IRF1 o+o
ENSG00000168310 IRF2 o++b
ENSG00000121210 KIAA0922 o-o
ENSG00000198894 KIAA1737 o--a
ENSG00000109787 KLF3 +o+
ENSG00000102554 KLF5 o-+
ENSG00000114030 KPNA1 NonAssociatedWithProgression
ENSG00000186432 KPNA4 NonAssociatedWithProgression
ENSG00000185896 LAMP1 o-o
ENSG00000143815 LBR +oo
ENSG00000145012 LPP oo+
ENSG00000144749 LRIG1 -+o
ENSG00000162337 LRP5 NonAssociatedWithProgression
ENSG00000151276 MAGI1 o+o
ENSG00000161021 MAML1 o--b
ENSG00000198909 MAP3K3 o-+
ENSG00000197442 MAP3K5 o++a
ENSG00000071054 MAP4K4 +-o
ENSG00000101367 MAPRE1 o--b
ENSG00000155130 MARCKS +-o
ENSG00000175130 MARCKSL1 ---
ENSG00000168906 MAT2A ---
ENSG00000180398 MCFD2 NonAssociatedWithProgression
ENSG00000160294 MCM3AP NonAssociatedWithProgression
ENSG00000143995 MEIS1 o++b
ENSG00000134138 MEIS2 o++b
ENSG00000072415 MPP5 NonAssociatedWithProgression
ENSG00000187109 NAP1L1 +-o
ENSG00000084676 NCOA1 NonAssociatedWithProgression
ENSG00000198646 NCOA6 o--b
ENSG00000102471 NDFIP2 NonAssociatedWithProgression
ENSG00000070614 NDST1 NonAssociatedWithProgression
ENSG00000100503 NIN oo+
ENSG00000154146 NRGN --o
ENSG00000108256 NUFIP2 --o
ENSG00000093000 NUP50 NonAssociatedWithProgression
ENSG00000091039 OSBPL8 o-o
ENSG00000167770 OTUB1 --o
ENSG00000129116 PALLD NonAssociatedWithProgression
ENSG00000115421 PAPOLG o++b
ENSG00000205268 PDE7A ---
ENSG00000143870 PDIA6 o-o
ENSG00000112419 PHACTR2 o++a
ENSG00000119403 PHF19 NonAssociatedWithProgression
ENSG00000056487 PHF21B +-o
ENSG00000073921 PICALM +o+
ENSG00000174238 PITPNA o--a
ENSG00000171033 PKIA o++a
ENSG00000160199 PKNOX1 o--b
ENSG00000144283 PKP4 NonAssociatedWithProgression
ENSG00000118495 PLAGL1 NonAssociatedWithProgression
ENSG00000122861 PLAU +o+
ENSG00000196313 POM121 o--b
ENSG00000108179 PPIF o+-
ENSG00000213639 PPP1CB +-o
ENSG00000058272 PPP1R12A o+o
ENSG00000154001 PPP2R5E o-o
ENSG00000170325 PRDM10 o+o
ENSG00000137492 PRKRIR NonAssociatedWithProgression
ENSG00000147471 PROSC -+o
ENSG00000112739 PRPF4B o+o
ENSG00000171522 PTGER4 o++b
ENSG00000120899 PTK2B NonAssociatedWithProgression
ENSG00000055917 PUM2 o-o
ENSG00000112531 QKI NonAssociatedWithProgression
ENSG00000107560 RAB11FIP2 NonAssociatedWithProgression
ENSG00000119318 RAD23B oo-
ENSG00000119707 RBM25 o+-
ENSG00000049449 RCN1 o-+
ENSG00000108375 RNF43 ---
ENSG00000133818 RRAS2 o++b
ENSG00000081019 RSBN1 o-o
ENSG00000137815 RTF1 NonAssociatedWithProgression
ENSG00000124813 RUNX2 +oo
ENSG00000163602 RYBP -o-
ENSG00000116497 S100PBP +o+
ENSG00000182568 SATB1 o--a
ENSG00000119042 SATB2 -+o
ENSG00000052802 SC4MOL +-o
ENSG00000129657 SEC14L1 o--b
ENSG00000100934 SEC23A o++b
ENSG00000100167 SEPT3 NonAssociatedWithProgression
ENSG00000156304 SFRS15 ---
ENSG00000080493 SLC4A4 -+o
ENSG00000139514 SLC7A1 +-o
ENSG00000163681 SLMAP o+o
ENSG00000166949 SMAD3 NonAssociatedWithProgression
ENSG00000138041 SMEK2 o-o
ENSG00000102172 SMS o-o
ENSG00000124562 SNRPC o--a
ENSG00000157734 SNX22 NonAssociatedWithProgression
ENSG00000143376 SNX27 NonAssociatedWithProgression
ENSG00000089006 SNX5 oo-
ENSG00000136158 SPRY2 o+o
ENSG00000175093 SPSB4 ---
ENSG00000141298 SSH2 NonAssociatedWithProgression
ENSG00000172345 STARD5 -+o
ENSG00000173757 STAT5B ---
ENSG00000125834 STK35 ---
ENSG00000101109 STK4 NonAssociatedWithProgression
ENSG00000117758 STX12 NonAssociatedWithProgression
ENSG00000136874 STX17 oo+
ENSG00000159082 SYNJ1 NonAssociatedWithProgression
ENSG00000157625 TAB3 o+o
ENSG00000121749 TBC1D15 o+o
ENSG00000187079 TEAD1 NonAssociatedWithProgression
ENSG00000163513 TGFBR2 +o+
ENSG00000198586 TLK1 NonAssociatedWithProgression
ENSG00000134970 TMED7 NonAssociatedWithProgression
ENSG00000135048 TMEM2 NonAssociatedWithProgression
ENSG00000120802 TMPO -o-
ENSG00000061938 TNK2 o-o
ENSG00000107854 TNKS2 o-+
ENSG00000090905 TNRC6A +-o
ENSG00000100354 TNRC6B o+o
ENSG00000198900 TOP1 o+o
ENSG00000077097 TOP2B o+o
ENSG00000198846 TOX +-o
ENSG00000143549 TPM3 oo-
ENSG00000173334 TRIB1 o--b
ENSG00000126814 TRMT5 NonAssociatedWithProgression
ENSG00000165914 TTC7B -+o
ENSG00000114383 TUSC2 +-o
ENSG00000137073 UBAP2 o--a
ENSG00000072401 UBE2D1 NonAssociatedWithProgression
ENSG00000109332 UBE2D3 NonAssociatedWithProgression
ENSG00000175931 UBE2O NonAssociatedWithProgression
ENSG00000109189 USP46 o++a
ENSG00000101558 VAPA NonAssociatedWithProgression
ENSG00000132471 WBP2 NonAssociatedWithProgression
ENSG00000140153 WDR20 +oo
ENSG00000136709 WDR33 +o+
ENSG00000109685 WHSC1 o--b
ENSG00000146457 WTAP o-o
ENSG00000170027 YWHAG o+-
ENSG00000181472 ZBTB2 o+o
ENSG00000141664 ZCCHC2 -o-
ENSG00000179456 ZNF238 o-o
ENSG00000186918 ZNF395 o--a
ENSG00000102935 ZNF423 o--b
ENSG00000218891 ZNF579 o-o
ENSG00000198740 ZNF652 o-o
ENSG00000197343 ZNF655 o++b