PEACHi
GeneSet p75 NTR receptor-mediated signalling (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
-+o -2.2 0.04176 47.0 6.0 2.19
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000108270 AATF o--b
ENSG00000159842 ABR oo+
ENSG00000151694 ADAM17 +-o
ENSG00000170776 AKAP13 o-o
ENSG00000117362 APH1A o--a
ENSG00000138613 APH1B o++b
ENSG00000089820 ARHGAP4 ---
ENSG00000141522 ARHGDIA ---
ENSG00000076928 ARHGEF1 o--b
ENSG00000132694 ARHGEF11 -+o
ENSG00000104880 ARHGEF18 o-o
ENSG00000116584 ARHGEF2 o--b
ENSG00000163947 ARHGEF3 NonAssociatedWithProgression
ENSG00000129675 ARHGEF6 ---
ENSG00000102606 ARHGEF7 NonAssociatedWithProgression
ENSG00000131089 ARHGEF9 o--b
ENSG00000153094 BCL2L11 NonAssociatedWithProgression
ENSG00000106144 CASP2 o--a
ENSG00000164305 CASP3 o++b
ENSG00000114346 ECT2 NonAssociatedWithProgression
ENSG00000102302 FGD1 NonAssociatedWithProgression
ENSG00000146192 FGD2 -+o
ENSG00000127084 FGD3 o--a
ENSG00000116478 HDAC1 ---
ENSG00000196591 HDAC2 NonAssociatedWithProgression
ENSG00000171720 HDAC3 ---
ENSG00000104365 IKBKB o++a
ENSG00000184216 IRAK1 o--a
ENSG00000142856 ITGB3BP -+o
ENSG00000205726 ITSN1 -+o
ENSG00000179222 MAGED1 NonAssociatedWithProgression
ENSG00000107643 MAPK8 o+o
ENSG00000126217 MCF2L o++a
ENSG00000172936 MYD88 +o+
ENSG00000162736 NCSTN o--b
ENSG00000173848 NET1 oo-
ENSG00000109320 NFKB1 o++a
ENSG00000100906 NFKBIA o-o
ENSG00000166681 NGFRAP1 NonAssociatedWithProgression
ENSG00000090924 PLEKHG2 o--a
ENSG00000110851 PRDM4 o--a
ENSG00000163558 PRKCI -+o
ENSG00000080815 PSEN1 o-o
ENSG00000205155 PSENEN NonAssociatedWithProgression
ENSG00000136238 RAC1 NonAssociatedWithProgression
ENSG00000173039 RELA o--a
ENSG00000067560 RHOA o-o
ENSG00000104312 RIPK2 o++b
ENSG00000143947 RPS27A o+o
ENSG00000115310 RTN4 +oo
ENSG00000115904 SOS1 -+o
ENSG00000100485 SOS2 NonAssociatedWithProgression
ENSG00000161011 SQSTM1 ---
ENSG00000156299 TIAM1 +o+
ENSG00000175104 TRAF6 NonAssociatedWithProgression
ENSG00000221983 UBA52 o--a
ENSG00000170315 UBB ---
ENSG00000141968 VAV1 o--a
ENSG00000160293 VAV2 oo+
ENSG00000108953 YWHAE NonAssociatedWithProgression