PEACHi
GeneSet hsa-miR-9-5p_targets (TarBase_6beta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
MixedRegulation -3.0 0.01313 75.0 20.0 10.43
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000196177 ACADSB oo+
ENSG00000104728 ARHGEF10 oo-
ENSG00000152348 ATG10 -oo
ENSG00000101974 ATP11C o++b
ENSG00000143882 ATP6V1C2 ---
ENSG00000165240 ATP7A o++b
ENSG00000148090 AUH NonAssociatedWithProgression
ENSG00000100290 BIK o--a
ENSG00000163378 C3orf64 NonAssociatedWithProgression
ENSG00000116489 CAPZA1 NonAssociatedWithProgression
ENSG00000166946 CCNDBP1 o++a
ENSG00000113328 CCNG1 +o+
ENSG00000083937 CHMP2B o+-
ENSG00000131873 CHSY1 o-+
ENSG00000113300 CNOT6 +-o
ENSG00000171604 CXXC5 o+-
ENSG00000172869 DMXL1 +-o
ENSG00000096696 DSP NonAssociatedWithProgression
ENSG00000165891 E2F7 NonAssociatedWithProgression
ENSG00000103319 EEF2K o++a
ENSG00000169242 EFNA1 oo+
ENSG00000100393 EP300 o++b
ENSG00000158234 FAIM o++a
ENSG00000136068 FLNB NonAssociatedWithProgression
ENSG00000187239 FNBP1 o--b
ENSG00000070404 FSTL3 ---
ENSG00000145990 GFOD1 oo-
ENSG00000206503 HLA-A +-o
ENSG00000010404 IDS +oo
ENSG00000197081 IGF2R +-o
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000136381 IREB2 o--b
ENSG00000159658 KIAA0494 NonAssociatedWithProgression
ENSG00000054523 KIF1B o++a
ENSG00000102554 KLF5 o-+
ENSG00000110031 LPXN -+o
ENSG00000123384 LRP1 NonAssociatedWithProgression
ENSG00000198909 MAP3K3 o-+
ENSG00000171444 MCC +o+
ENSG00000198625 MDM4 o-o
ENSG00000140406 MESDC1 +oo
ENSG00000167548 MLL2 o-o
ENSG00000185787 MORF4L1 NonAssociatedWithProgression
ENSG00000177034 MTX3 NonAssociatedWithProgression
ENSG00000100345 MYH9 -o-
ENSG00000172915 NBEA -+o
ENSG00000196498 NCOR2 ---
ENSG00000072736 NFATC3 o--a
ENSG00000109320 NFKB1 o++a
ENSG00000100503 NIN oo+
ENSG00000170113 NIPA1 o++b
ENSG00000125820 NKX2-2 o-+
ENSG00000123240 OPTN +o+
ENSG00000141456 PELP1 o--a
ENSG00000069943 PIGB o++b
ENSG00000021300 PLEKHB1 ---
ENSG00000143442 POGZ NonAssociatedWithProgression
ENSG00000143190 POU2F1 NonAssociatedWithProgression
ENSG00000067113 PPAP2A o+-
ENSG00000163605 PPP4R2 o-o
ENSG00000162976 PQLC3 o++a
ENSG00000115825 PRKD3 o++a
ENSG00000152894 PTPRK NonAssociatedWithProgression
ENSG00000011454 RABGAP1 o--a
ENSG00000123094 RASSF8 o+-
ENSG00000179051 RCC2 o--b
ENSG00000104140 RHOV ---
ENSG00000146083 RNF44 NonAssociatedWithProgression
ENSG00000107651 SEC23IP NonAssociatedWithProgression
ENSG00000096717 SIRT1 +-o
ENSG00000197375 SLC22A5 o++b
ENSG00000174032 SLC25A30 +o+
ENSG00000104154 SLC30A4 -+o
ENSG00000215790 SLC35E2 -oo
ENSG00000008294 SPAG9 oo-
ENSG00000159674 SPON2 o++b
ENSG00000115306 SPTBN1 oo-
ENSG00000104375 STK3 oo+
ENSG00000117632 STMN1 o--b
ENSG00000129103 SUMF2 NonAssociatedWithProgression
ENSG00000169895 SYAP1 ---
ENSG00000131018 SYNE1 o++b
ENSG00000054654 SYNE2 o--b
ENSG00000108639 SYNGR2 o--a
ENSG00000008282 SYPL1 o+-
ENSG00000028839 TBPL1 NonAssociatedWithProgression
ENSG00000070759 TESK2 +o+
ENSG00000092439 TRPM7 NonAssociatedWithProgression
ENSG00000196367 TRRAP o-o
ENSG00000165914 TTC7B -+o
ENSG00000105849 TWISTNB ---
ENSG00000109814 UGDH NonAssociatedWithProgression
ENSG00000152332 UHMK1 o--a
ENSG00000112715 VEGFA +-o
ENSG00000088930 XRN2 NonAssociatedWithProgression
ENSG00000215421 ZNF407 o-+