PEACHi
GeneSet chr19p13 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -8.4 0.0 191.0 52.0 23.38
o--a -2.4 0.028 191.0 40.0 27.13
o--b -2.9 0.01768 191.0 41.0 26.39
AllGenesAssociatedWithProgression -6.2 4.0E-5 222.0 191.0 161.74
DownRegulated -1.7976931348623157E308 0.0 191.0 165.0 112.79
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000104964 AES o--b
ENSG00000105127 AKAP8 NonAssociatedWithProgression
ENSG00000011243 AKAP8L ---
ENSG00000125652 ALKBH7 o--a
ENSG00000104899 AMH ---
ENSG00000167772 ANGPTL4 NonAssociatedWithProgression
ENSG00000072958 AP1M1 o--b
ENSG00000065000 AP3D1 o+o
ENSG00000011132 APBA3 o--a
ENSG00000104880 ARHGEF18 o-o
ENSG00000105676 ARMC6 o--a
ENSG00000105643 ARRDC2 ---
ENSG00000105011 ASF1B o-o
ENSG00000198356 ASNA1 o--b
ENSG00000130734 ATG4D o--b
ENSG00000105726 ATP13A1 ---
ENSG00000099624 ATP5D o--a
ENSG00000141867 BRD4 oo-
ENSG00000172270 BSG ---
ENSG00000133243 BTBD2 -o-
ENSG00000074842 C19orf10 o-o
ENSG00000141933 C19orf20 ---
ENSG00000198858 C19orf22 ---
ENSG00000228300 C19orf24 ---
ENSG00000119559 C19orf25 ---
ENSG00000161091 C19orf28 ---
ENSG00000105298 C19orf29 NonAssociatedWithProgression
ENSG00000214046 C19orf42 o--a
ENSG00000123144 C19orf43 o--a
ENSG00000105700 C19orf50 o-o
ENSG00000142444 C19orf52 o-o
ENSG00000105583 C19orf56 o-o
ENSG00000132016 C19orf57 ---
ENSG00000182087 C19orf6 o--b
ENSG00000179218 CALR ---
ENSG00000132024 CC2D1A NonAssociatedWithProgression
ENSG00000007080 CCDC124 o--a
ENSG00000099804 CDC34 o--b
ENSG00000105401 CDC37 ---
ENSG00000197766 CFD ---
ENSG00000167670 CHAF1A o--b
ENSG00000085872 CHERP o-o
ENSG00000099622 CIRBP o--b
ENSG00000125656 CLPP o--b
ENSG00000105669 COPE o-o
ENSG00000133275 CSNK1G2 ---
ENSG00000178531 CTXN1 NonAssociatedWithProgression
ENSG00000179284 DAND5 oo+
ENSG00000071626 DAZAP1 ---
ENSG00000123136 DDX39 o--b
ENSG00000205744 DENND1C ---
ENSG00000095059 DHPS o-o
ENSG00000132002 DNAJB1 NonAssociatedWithProgression
ENSG00000105612 DNASE2 NonAssociatedWithProgression
ENSG00000130816 DNMT1 o-o
ENSG00000130158 DOCK6 ---
ENSG00000129932 DOHH ---
ENSG00000104885 DOT1L o--b
ENSG00000142002 DPP9 o--b
ENSG00000130159 ECSIT o--a
ENSG00000066044 ELAVL1 NonAssociatedWithProgression
ENSG00000105656 ELL o--a
ENSG00000130165 ELOF1 o-o
ENSG00000127527 EPS15L1 ---
ENSG00000142459 EVI5L NonAssociatedWithProgression
ENSG00000129968 FAM108A1 ---
ENSG00000141971 FAM125A ---
ENSG00000127452 FBXL12 +-o
ENSG00000130475 FCHO1 o--b
ENSG00000141965 FEM1A o--b
ENSG00000070404 FSTL3 ---
ENSG00000099860 GADD45B o--b
ENSG00000179271 GADD45GIP1 ---
ENSG00000130005 GAMT o--b
ENSG00000167491 GATAD2A o--a
ENSG00000105607 GCDH NonAssociatedWithProgression
ENSG00000123159 GIPC1 o--b
ENSG00000130309 GLT25D1 o--a
ENSG00000088256 GNA11 ---
ENSG00000060558 GNA15 o--b
ENSG00000125734 GPR108 o--a
ENSG00000167468 GPX4 o--b
ENSG00000125651 GTF2F1 o--a
ENSG00000130299 GTPBP3 NonAssociatedWithProgression
ENSG00000064961 HMG20B o--a
ENSG00000180448 HMHA1 ---
ENSG00000095066 HOOK2 NonAssociatedWithProgression
ENSG00000160888 IER2 o--b
ENSG00000216490 IFI30 oo+
ENSG00000104998 IL27RA o++b
ENSG00000129351 ILF3 -o-
ENSG00000171105 INSR +o+
ENSG00000171223 JUNB ---
ENSG00000130522 JUND o--b
ENSG00000079999 KEAP1 o-o
ENSG00000088247 KHSRP o--b
ENSG00000129911 KLF16 ---
ENSG00000167487 KLHL26 -+o
ENSG00000176619 LMNB2 NonAssociatedWithProgression
ENSG00000072071 LPHN1 ---
ENSG00000130520 LSM4 o--a
ENSG00000130332 LSM7 o--a
ENSG00000130479 MAP1S o--a
ENSG00000126934 MAP2K2 o--a
ENSG00000076984 MAP2K7 ---
ENSG00000099785 MARCH2 o--a
ENSG00000099308 MAST3 oo+
ENSG00000071655 MBD3 o--a
ENSG00000090674 MCOLN1 ---
ENSG00000167470 MIDN o--b
ENSG00000105556 MIER2 ---
ENSG00000099875 MKNK2 o--b
ENSG00000172081 MOBKL2A o--b
ENSG00000130312 MRPL34 o--a
ENSG00000105364 MRPL4 o--b
ENSG00000183617 MRPL54 o--a
ENSG00000160953 MUM1 o--a
ENSG00000099331 MYO9B oo+
ENSG00000125912 NCLN o--a
ENSG00000174886 NDUFA11 o-o
ENSG00000186010 NDUFA13 o-o
ENSG00000167774 NDUFA7 o-o
ENSG00000099795 NDUFB7 o--a
ENSG00000115286 NDUFS7 ---
ENSG00000074181 NOTCH3 o--b
ENSG00000160113 NR2F6 NonAssociatedWithProgression
ENSG00000171119 NRTN NonAssociatedWithProgression
ENSG00000104904 OAZ1 -o-
ENSG00000065989 PDE4A ---
ENSG00000130517 PGPEP1 -oo
ENSG00000127445 PIN1 o-o
ENSG00000186111 PIP5K1C ---
ENSG00000104886 PLEKHJ1 o-o
ENSG00000032444 PNPLA6 ---
ENSG00000130810 PPAN ---
ENSG00000167815 PRDX2 --o
ENSG00000072062 PRKACA ---
ENSG00000130175 PRKCSH o--b
ENSG00000011304 PTBP1 ---
ENSG00000213339 QTRT1 o--a
ENSG00000185236 RAB11B ---
ENSG00000105649 RAB3A NonAssociatedWithProgression
ENSG00000167461 RAB8A +-o
ENSG00000179262 RAD23A NonAssociatedWithProgression
ENSG00000031823 RANBP3 NonAssociatedWithProgression
ENSG00000161847 RAVER1 ---
ENSG00000079313 REXO1 ---
ENSG00000132005 RFX1 ---
ENSG00000087903 RFX2 o-o
ENSG00000104889 RNASEH2A o--b
ENSG00000070423 RNF126 o--a
ENSG00000105640 RPL18A o-o
ENSG00000130255 RPL36 o-o
ENSG00000233927 RPS28 o-o
ENSG00000160633 SAFB o--b
ENSG00000130254 SAFB2 +-o
ENSG00000141858 SAMD1 o--b
ENSG00000064932 SBNO2 ---
ENSG00000104897 SF3A2 o--b
ENSG00000104969 SGTA o--a
ENSG00000141985 SH3GL1 o-o
ENSG00000127511 SIN3B o-o
ENSG00000077463 SIRT6 o--b
ENSG00000125648 SLC25A23 ---
ENSG00000181035 SLC25A42 +o+
ENSG00000130304 SLC27A1 --o
ENSG00000127526 SLC35E1 o--a
ENSG00000141873 SLC39A3 ---
ENSG00000129353 SLC44A2 NonAssociatedWithProgression
ENSG00000127616 SMARCA4 o--b
ENSG00000104976 SNAPC2 o--a
ENSG00000130511 SSBP4 o--b
ENSG00000118046 STK11 o--a
ENSG00000104915 STX10 o--a
ENSG00000076944 STXBP2 o--b
ENSG00000161860 SYCE2 o--a
ENSG00000172009 THOP1 ---
ENSG00000127666 TICAM1 o--b
ENSG00000099800 TIMM13 o--a
ENSG00000104980 TIMM44 ---
ENSG00000065717 TLE2 ---
ENSG00000104953 TLE6 NonAssociatedWithProgression
ENSG00000099203 TMED1 o--a
ENSG00000167664 TMIGD2 ---
ENSG00000125657 TNFSF9 -+o
ENSG00000105576 TNPO2 o--a
ENSG00000181029 TRAPPC5 o-o
ENSG00000125733 TRIP10 NonAssociatedWithProgression
ENSG00000188229 TUBB2C o--b
ENSG00000104833 TUBB4 ---
ENSG00000105397 TYK2 -o-
ENSG00000221983 UBA52 o--a
ENSG00000034063 UHRF1 o--b
ENSG00000005007 UPF1 o--b
ENSG00000141968 VAV1 o--a
ENSG00000187650 VMAC -+o
ENSG00000065268 WDR18 o--a
ENSG00000011451 WIZ NonAssociatedWithProgression
ENSG00000178951 ZBTB7A o--b
ENSG00000197020 ZNF100 NonAssociatedWithProgression
ENSG00000105708 ZNF14 NonAssociatedWithProgression
ENSG00000188629 ZNF177 -+o
ENSG00000213096 ZNF254 NonAssociatedWithProgression
ENSG00000130803 ZNF317 o--a
ENSG00000160961 ZNF333 +o+
ENSG00000197857 ZNF44 -+o
ENSG00000197044 ZNF441 NonAssociatedWithProgression
ENSG00000198342 ZNF442 o++a
ENSG00000180855 ZNF443 o++b
ENSG00000177599 ZNF491 o++b
ENSG00000081665 ZNF506 NonAssociatedWithProgression
ENSG00000167785 ZNF558 ---
ENSG00000188321 ZNF559 NonAssociatedWithProgression
ENSG00000171469 ZNF561 NonAssociatedWithProgression
ENSG00000171466 ZNF562 NonAssociatedWithProgression
ENSG00000249709 ZNF564 NonAssociatedWithProgression
ENSG00000213297 ZNF625 +o+
ENSG00000198551 ZNF627 o+o
ENSG00000196757 ZNF700 o++b
ENSG00000242852 ZNF709 o++b
ENSG00000175691 ZNF77 o++a
ENSG00000196466 ZNF799 o++b