PEACHi
GeneSet chr16p13 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--- -3.0 0.01679 102.0 23.0 12.48
o--b -2.3 0.03202 102.0 23.0 14.09
AllGenesAssociatedWithProgression -5.1 4.4E-4 115.0 102.0 83.79
DownRegulated -7.5 0.0 102.0 85.0 60.24
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000183044 ABAT o++a
ENSG00000162066 AMDHD2 ---
ENSG00000168096 ANKS3 ---
ENSG00000185883 ATP6V0C o--b
ENSG00000103126 AXIN1 +-o
ENSG00000103507 BCKDK o--a
ENSG00000103429 BFAR o++b
ENSG00000249124 C16orf13 ---
ENSG00000007520 C16orf42 o--b
ENSG00000089486 C16orf5 o--b
ENSG00000162062 C16orf59 ---
ENSG00000133393 C16orf63 NonAssociatedWithProgression
ENSG00000067365 C16orf68 -o-
ENSG00000175643 C16orf75 o++b
ENSG00000182685 C16orf79 ---
ENSG00000153048 CARHSP1 o--b
ENSG00000162063 CCNF o--a
ENSG00000140743 CDR2 o--b
ENSG00000127586 CHTF18 NonAssociatedWithProgression
ENSG00000103249 CLCN7 ---
ENSG00000103351 CLUAP1 oo+
ENSG00000103426 CORO7 ---
ENSG00000007545 CRAMP1L ---
ENSG00000005339 CREBBP NonAssociatedWithProgression
ENSG00000070770 CSNK2A2 o-o
ENSG00000242612 DECR2 --o
ENSG00000182108 DEXI --o
ENSG00000103423 DNAJA3 NonAssociatedWithProgression
ENSG00000213918 DNASE1 ---
ENSG00000167968 DNASE1L2 o--a
ENSG00000175595 ERCC4 o-o
ENSG00000180185 FAHD1 o--b
ENSG00000153443 FAM100A o--b
ENSG00000059122 FLYWCH1 -+o
ENSG00000127554 GFER ---
ENSG00000126603 GLIS2 NonAssociatedWithProgression
ENSG00000090581 GNPTG o++b
ENSG00000103342 GSPT1 NonAssociatedWithProgression
ENSG00000063854 HAGH o--a
ENSG00000103253 HAGHL o--b
ENSG00000103145 HCFC1R1 o--a
ENSG00000103415 HMOX2 o--b
ENSG00000187535 IFT140 ---
ENSG00000008517 IL32 ---
ENSG00000167930 ITFG3 o-o
ENSG00000005844 ITGAL NonAssociatedWithProgression
ENSG00000166783 KIAA0430 o--b
ENSG00000189067 LITAF o++a
ENSG00000007392 LUC7L o--b
ENSG00000138834 MAPK8IP3 ---
ENSG00000103260 METRN o--a
ENSG00000102858 MGRN1 -o-
ENSG00000186260 MKL2 +o+
ENSG00000103152 MPG o--a
ENSG00000086504 MRPL28 o--b
ENSG00000074071 MRPS34 o--b
ENSG00000103174 NAGPA NonAssociatedWithProgression
ENSG00000072864 NDE1 --o
ENSG00000140990 NDUFB10 -o-
ENSG00000103202 NME4 --o
ENSG00000153406 NMRAL1 o--a
ENSG00000103512 NOMO1 o--b
ENSG00000103226 NOMO3 ---
ENSG00000183971 NPW ---
ENSG00000157045 NTAN1 o--b
ENSG00000065057 NTHL1 --o
ENSG00000095906 NUBP2 o--a
ENSG00000168101 NUDT16L1 o--b
ENSG00000162073 PAQR4 NonAssociatedWithProgression
ENSG00000140694 PARN o-o
ENSG00000140992 PDPK1 -o-
ENSG00000184207 PGP o--a
ENSG00000007541 PIGQ ---
ENSG00000008710 PKD1 o--a
ENSG00000127564 PKMYT1 +-o
ENSG00000140650 PMM2 o--b
ENSG00000161980 POLR3K -oo
ENSG00000007038 PRSS21 o--a
ENSG00000090565 RAB11FIP3 o--a
ENSG00000140983 RHOT2 o--b
ENSG00000205937 RNPS1 NonAssociatedWithProgression
ENSG00000067836 ROGDI --o
ENSG00000140988 RPS2 o--a
ENSG00000007376 RPUSD1 o-o
ENSG00000198736 SEPX1 NonAssociatedWithProgression
ENSG00000065054 SLC9A3R2 -oo
ENSG00000185338 SOCS1 o--a
ENSG00000103326 SOLH ---
ENSG00000162032 SPSB3 +-o
ENSG00000167978 SRRM2 o--a
ENSG00000103266 STUB1 ---
ENSG00000162065 TBC1D24 -+o
ENSG00000183751 TBL3 o--b
ENSG00000100726 TELO2 ---
ENSG00000090447 TFAP4 o--b
ENSG00000131652 THOC6 ---
ENSG00000066654 THUMPD1 o++b
ENSG00000006327 TNFRSF12A NonAssociatedWithProgression
ENSG00000126602 TRAP1 o--a
ENSG00000103197 TSC2 ---
ENSG00000153066 TXNDC11 o--a
ENSG00000103275 UBE2I o--a
ENSG00000118900 UBN1 o--b
ENSG00000059145 UNKL +o+
ENSG00000187555 USP7 ---
ENSG00000127580 WDR24 o--b
ENSG00000127578 WFIKKN1 ---
ENSG00000122299 ZC3H7A o-+
ENSG00000103343 ZNF174 o++b
ENSG00000010539 ZNF200 NonAssociatedWithProgression
ENSG00000085644 ZNF213 o-o
ENSG00000006194 ZNF263 o--a
ENSG00000140987 ZNF434 o--a
ENSG00000167962 ZNF598 o--b
ENSG00000162086 ZNF75A +oo