PEACHi
GeneSet chr13q14 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o++b -3.9 0.0048 26.0 8.0 2.08
UpRegulated -2.5 0.03791 26.0 13.0 7.03
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000253710 ALG11 o--a
ENSG00000123191 ATP7B o++b
ENSG00000102445 C13orf18 +-o
ENSG00000179630 C13orf31 o++a
ENSG00000102547 CAB39L -+o
ENSG00000102543 CDADC1 NonAssociatedWithProgression
ENSG00000136108 CKAP2 NonAssociatedWithProgression
ENSG00000136152 COG3 NonAssociatedWithProgression
ENSG00000176124 DLEU1 -o-
ENSG00000231607 DLEU2 oo-
ENSG00000186047 DLEU7 NonAssociatedWithProgression
ENSG00000139684 ESD o++b
ENSG00000102531 FNDC3A o+o
ENSG00000188342 GTF2F2 NonAssociatedWithProgression
ENSG00000123201 GUCY1B2 NonAssociatedWithProgression
ENSG00000102786 INTS6 -+o
ENSG00000102753 KPNA3 NonAssociatedWithProgression
ENSG00000136167 LCP1 o--b
ENSG00000136141 LRCH1 o--b
ENSG00000136146 MED4 NonAssociatedWithProgression
ENSG00000102738 MRPS31 o+o
ENSG00000120662 MTRF1 o++b
ENSG00000136159 NUDT15 NonAssociatedWithProgression
ENSG00000083635 NUFIP1 NonAssociatedWithProgression
ENSG00000136147 PHF11 o++b
ENSG00000152192 POU4F1 oo+
ENSG00000139687 RB1 NonAssociatedWithProgression
ENSG00000136144 RCBTB1 o++b
ENSG00000136161 RCBTB2 o++b
ENSG00000133111 RFXAP NonAssociatedWithProgression
ENSG00000136104 RNASEH2B o--a
ENSG00000136169 SETDB2 o++b
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000174032 SLC25A30 +o+
ENSG00000136114 THSD1 +-o
ENSG00000133112 TPT1 oo-
ENSG00000204977 TRIM13 o-o
ENSG00000102804 TSC22D1 NonAssociatedWithProgression
ENSG00000136100 VPS36 ---
ENSG00000139668 WDFY2 o++b
ENSG00000123200 ZC3H13 NonAssociatedWithProgression