PEACHi
GeneSet chr11p15 (Chromosomal_Bands.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo+ -2.2 0.0385 66.0 5.0 1.71
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000148926 ADM +oo
ENSG00000166313 APBB1 o-o
ENSG00000132254 ARFIP2 ---
ENSG00000133794 ARNTL NonAssociatedWithProgression
ENSG00000142102 ATHL1 NonAssociatedWithProgression
ENSG00000177951 BET1L o--b
ENSG00000148925 BTBD10 oo+
ENSG00000110696 C11orf58 +-o
ENSG00000110619 CARS +oo
ENSG00000177697 CD151 o-+
ENSG00000110651 CD81 o--b
ENSG00000177830 CHID1 --o
ENSG00000129749 CHRNA10 o--a
ENSG00000129083 COPB1 o+-
ENSG00000198730 CTR9 o-o
ENSG00000117984 CTSD NonAssociatedWithProgression
ENSG00000186104 CYP2R1 NonAssociatedWithProgression
ENSG00000177030 DEAF1 o-o
ENSG00000179532 DNHD1 ---
ENSG00000184545 DUSP8 ---
ENSG00000129173 E2F8 NonAssociatedWithProgression
ENSG00000110321 EIF4G2 o+-
ENSG00000177106 EPS8L2 --o
ENSG00000183161 FANCF NonAssociatedWithProgression
ENSG00000132286 FXC1 o--a
ENSG00000110328 GALNTL4 oo+
ENSG00000110768 GTF2H1 o++b
ENSG00000174775 HRAS o--b
ENSG00000109854 HTATIP2 o+-
ENSG00000185885 IFITM1 o--a
ENSG00000166333 ILK NonAssociatedWithProgression
ENSG00000205339 IPO7 NonAssociatedWithProgression
ENSG00000185507 IRF7 ---
ENSG00000187486 KCNJ11 -+o
ENSG00000134333 LDHA +-o
ENSG00000177595 LRDD ---
ENSG00000133816 MICAL2 o++a
ENSG00000214026 MRPL23 ---
ENSG00000205531 NAP1L4 ---
ENSG00000070081 NUCB2 -+o
ENSG00000110713 NUP98 o--a
ENSG00000011405 PIK3C2A o++b
ENSG00000177666 PNPLA2 NonAssociatedWithProgression
ENSG00000177700 POLR2L o-o
ENSG00000185238 PRMT3 o+o
ENSG00000129084 PSMA1 o--a
ENSG00000185627 PSMD13 o--b
ENSG00000174915 PTDSS2 o--a
ENSG00000099849 RASSF7 o--a
ENSG00000177105 RHOG o--a
ENSG00000177963 RIC8A o--b
ENSG00000110315 RNF141 oo+
ENSG00000023191 RNH1 o--a
ENSG00000166441 RPL27A o--a
ENSG00000177600 RPLP2 NonAssociatedWithProgression
ENSG00000133818 RRAS2 o++b
ENSG00000167325 RRM1 o--a
ENSG00000166788 SAAL1 o--b
ENSG00000185187 SIGIRR o--b
ENSG00000142082 SIRT3 +o+
ENSG00000177542 SLC25A22 NonAssociatedWithProgression
ENSG00000166311 SMPD1 o-+
ENSG00000179119 SPTY2D1 o+o
ENSG00000130413 STK33 oo+
ENSG00000133789 SWAP70 o--a
ENSG00000166337 TAF10 o--a
ENSG00000177156 TALDO1 o--b
ENSG00000187079 TEAD1 NonAssociatedWithProgression
ENSG00000166471 TMEM41B o-+
ENSG00000177042 TMEM80 o--b
ENSG00000175348 TMEM9B NonAssociatedWithProgression
ENSG00000166340 TPP1 o--a
ENSG00000132109 TRIM21 NonAssociatedWithProgression
ENSG00000132256 TRIM5 o++b
ENSG00000166436 TRIM66 oo+
ENSG00000167333 TRIM68 +o+
ENSG00000074319 TSG101 NonAssociatedWithProgression
ENSG00000214063 TSPAN4 ---
ENSG00000184281 TSSC4 ---
ENSG00000166483 WEE1 NonAssociatedWithProgression
ENSG00000236287 ZBED5 o+o
ENSG00000177054 ZDHHC13 NonAssociatedWithProgression
ENSG00000166478 ZNF143 o+o
ENSG00000005801 ZNF195 NonAssociatedWithProgression