PEACHi
GeneSet V$TEL2_Q6 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.5 0.0479 87.0 24.0 12.36
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000162688 AGL -+o
ENSG00000204310 AGPAT1 o--b
ENSG00000123505 AMD1 o--a
ENSG00000132254 ARFIP2 ---
ENSG00000175220 ARHGAP1 NonAssociatedWithProgression
ENSG00000075884 ARHGAP15 -+o
ENSG00000089820 ARHGAP4 ---
ENSG00000102606 ARHGEF7 NonAssociatedWithProgression
ENSG00000141480 ARRB2 ---
ENSG00000147439 BIN3 o--b
ENSG00000095564 BTAF1 NonAssociatedWithProgression
ENSG00000156030 C14orf43 o--a
ENSG00000133466 C1QTNF6 +o+
ENSG00000127022 CANX NonAssociatedWithProgression
ENSG00000131236 CAP1 o--a
ENSG00000116489 CAPZA1 NonAssociatedWithProgression
ENSG00000064012 CASP8 +-o
ENSG00000153113 CAST o+o
ENSG00000169217 CD2BP2 o--a
ENSG00000198851 CD3E o--a
ENSG00000105369 CD79A ---
ENSG00000163320 CGGBP1 NonAssociatedWithProgression
ENSG00000173575 CHD2 o--b
ENSG00000173207 CKS1B NonAssociatedWithProgression
ENSG00000110880 CORO1C +oo
ENSG00000152457 DCLRE1C o-o
ENSG00000175197 DDIT3 +-o
ENSG00000107625 DDX50 NonAssociatedWithProgression
ENSG00000065357 DGKA NonAssociatedWithProgression
ENSG00000184047 DIABLO o--a
ENSG00000135164 DMTF1 NonAssociatedWithProgression
ENSG00000135392 DNAJC14 o++b
ENSG00000133740 E2F5 o--b
ENSG00000158711 ELK4 NonAssociatedWithProgression
ENSG00000100632 ERH NonAssociatedWithProgression
ENSG00000173153 ESRRA ---
ENSG00000162694 EXTL2 NonAssociatedWithProgression
ENSG00000167196 FBXO22 NonAssociatedWithProgression
ENSG00000130475 FCHO1 o--b
ENSG00000172500 FIBP --o
ENSG00000140564 FURIN o++a
ENSG00000132286 FXC1 o--a
ENSG00000162676 GFI1 o-o
ENSG00000100938 GMPR2 -+o
ENSG00000180353 HCLS1 o--a
ENSG00000148634 HERC4 o++a
ENSG00000149929 HIRIP3 o--a
ENSG00000101294 HM13 o--b
ENSG00000137309 HMGA1 o--b
ENSG00000104365 IKBKB o++a
ENSG00000137070 IL11RA NonAssociatedWithProgression
ENSG00000110944 IL23A NonAssociatedWithProgression
ENSG00000111653 ING4 o+-
ENSG00000136003 ISCU o+o
ENSG00000171223 JUNB ---
ENSG00000136167 LCP1 o--b
ENSG00000011009 LYPLA2 o--a
ENSG00000173327 MAP3K11 ---
ENSG00000168067 MAP4K2 ---
ENSG00000075413 MARK3 NonAssociatedWithProgression
ENSG00000187778 MCRS1 o--b
ENSG00000143995 MEIS1 o++b
ENSG00000071073 MGAT4A NonAssociatedWithProgression
ENSG00000172590 MRPL52 oo+
ENSG00000132780 NASP o--a
ENSG00000158864 NDUFS2 --o
ENSG00000101888 NXT2 NonAssociatedWithProgression
ENSG00000114026 OGG1 o--a
ENSG00000196455 PIK3R4 NonAssociatedWithProgression
ENSG00000176903 PNMA1 +oo
ENSG00000137168 PPIL1 NonAssociatedWithProgression
ENSG00000149923 PPP4C --o
ENSG00000072062 PRKACA ---
ENSG00000142875 PRKACB o--b
ENSG00000161057 PSMC2 o+o
ENSG00000185627 PSMD13 o--b
ENSG00000172780 RAB43 +o+
ENSG00000169220 RGS14 o--b
ENSG00000138835 RGS3 o++a
ENSG00000104140 RHOV ---
ENSG00000100599 RIN3 o--a
ENSG00000127870 RNF6 NonAssociatedWithProgression
ENSG00000205937 RNPS1 NonAssociatedWithProgression
ENSG00000117133 RPF1 o+-
ENSG00000075856 SART3 NonAssociatedWithProgression
ENSG00000140497 SCAMP2 ---
ENSG00000176986 SEC24C ---
ENSG00000143368 SF3B4 o--b
ENSG00000160691 SHC1 o--a
ENSG00000142082 SIRT3 +o+
ENSG00000005022 SLC25A5 NonAssociatedWithProgression
ENSG00000162695 SLC30A7 o+o
ENSG00000029364 SLC39A9 NonAssociatedWithProgression
ENSG00000109062 SLC9A3R1 o--a
ENSG00000164609 SLU7 o--a
ENSG00000125835 SNRPB o--a
ENSG00000028528 SNX1 o++b
ENSG00000007341 ST7L -oo
ENSG00000135604 STX11 o++b
ENSG00000213246 SUPT4H1 o--a
ENSG00000148835 TAF5 o--a
ENSG00000140262 TCF12 o--a
ENSG00000068323 TFE3 o--a
ENSG00000118707 TGIF2 ---
ENSG00000134809 TIMM10 o-o
ENSG00000170043 TRAPPC1 o--a
ENSG00000146063 TRIM41 +-o
ENSG00000063244 U2AF2 ---
ENSG00000177889 UBE2N o--a
ENSG00000140455 USP3 oo-
ENSG00000118640 VAMP8 NonAssociatedWithProgression
ENSG00000156599 ZDHHC5 o--b
ENSG00000126746 ZNF384 o+o
ENSG00000175213 ZNF408 o--a