PEACHi
GeneSet V$RORA1_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o+- -4.3 0.01708 80.0 10.0 2.59
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000183044 ABAT o++a
ENSG00000158201 ABHD3 -+o
ENSG00000100412 ACO2 -oo
ENSG00000068366 ACSL4 o+-
ENSG00000141385 AFG3L2 o--b
ENSG00000131480 AOC2 o+-
ENSG00000065000 AP3D1 o+o
ENSG00000165527 ARF6 NonAssociatedWithProgression
ENSG00000133794 ARNTL NonAssociatedWithProgression
ENSG00000159199 ATP5G1 NonAssociatedWithProgression
ENSG00000241468 ATP5J2 NonAssociatedWithProgression
ENSG00000182220 ATP6AP2 -+o
ENSG00000114573 ATP6V1A NonAssociatedWithProgression
ENSG00000143515 ATP8B2 o-+
ENSG00000171953 ATPAF2 o-o
ENSG00000116128 BCL9 NonAssociatedWithProgression
ENSG00000132640 BTBD3 o+o
ENSG00000136261 BZW2 NonAssociatedWithProgression
ENSG00000141034 C17orf39 o--a
ENSG00000124596 C6orf130 o-o
ENSG00000110931 CAMKK2 NonAssociatedWithProgression
ENSG00000173575 CHD2 o--b
ENSG00000118260 CREB1 o+-
ENSG00000116761 CTH o++b
ENSG00000171604 CXXC5 o+-
ENSG00000105516 DBP ---
ENSG00000138101 DTNB NonAssociatedWithProgression
ENSG00000143590 EFNA3 ---
ENSG00000162694 EXTL2 NonAssociatedWithProgression
ENSG00000118496 FBXO30 o+o
ENSG00000109670 FBXW7 o+-
ENSG00000139112 GABARAPL1 o++b
ENSG00000213930 GALT ---
ENSG00000142252 GEMIN7 o--b
ENSG00000198814 GK -oo
ENSG00000143147 GPR161 NonAssociatedWithProgression
ENSG00000120093 HOXB3 oo+
ENSG00000144381 HSPD1 o--b
ENSG00000115541 HSPE1 o+-
ENSG00000116679 IVNS1ABP NonAssociatedWithProgression
ENSG00000008083 JARID2 o-o
ENSG00000171988 JMJD1C +oo
ENSG00000170049 KCNAB3 ---
ENSG00000100578 KIAA0586 o--b
ENSG00000171444 MCC +o+
ENSG00000108292 MLLT6 o--a
ENSG00000105926 MPP6 o--b
ENSG00000108826 MRPL27 -+o
ENSG00000153944 MSI2 NonAssociatedWithProgression
ENSG00000118513 MYB o-+
ENSG00000184613 NELL2 -oo
ENSG00000067141 NEO1 o++a
ENSG00000072736 NFATC3 o--a
ENSG00000001167 NFYA NonAssociatedWithProgression
ENSG00000183691 NOG +-o
ENSG00000170485 NPAS2 o-+
ENSG00000129535 NRL o-o
ENSG00000124507 PACSIN1 -+o
ENSG00000163346 PBXIP1 o--b
ENSG00000100410 PHF5A o--b
ENSG00000137193 PIM1 o--b
ENSG00000110697 PITPNM1 ---
ENSG00000113575 PPP2CA o--b
ENSG00000112640 PPP2R5D o--a
ENSG00000164985 PSIP1 o-o
ENSG00000105649 RAB3A NonAssociatedWithProgression
ENSG00000105808 RASA4 o--b
ENSG00000111344 RASAL1 --o
ENSG00000153250 RBMS1 o++b
ENSG00000089902 RCOR1 o-o
ENSG00000145331 RG9MTD2 -+o
ENSG00000182732 RGS6 o++a
ENSG00000133318 RTN3 o--a
ENSG00000182568 SATB1 o--a
ENSG00000010803 SCMH1 NonAssociatedWithProgression
ENSG00000155926 SLA o+-
ENSG00000033867 SLC4A7 oo+
ENSG00000180008 SOCS4 +o+
ENSG00000008294 SPAG9 oo-
ENSG00000107742 SPOCK2 +o+
ENSG00000197694 SPTAN1 NonAssociatedWithProgression
ENSG00000112079 STK38 o--b
ENSG00000136143 SUCLA2 -+o
ENSG00000131018 SYNE1 o++b
ENSG00000157625 TAB3 o+o
ENSG00000081059 TCF7 o+-
ENSG00000100575 TIMM9 -+o
ENSG00000143549 TPM3 oo-
ENSG00000126602 TRAP1 o--a
ENSG00000114999 TTL NonAssociatedWithProgression
ENSG00000122042 UBL3 NonAssociatedWithProgression
ENSG00000147854 UHRF2 o-o
ENSG00000138592 USP8 o+-
ENSG00000139190 VAMP1 o++b
ENSG00000220205 VAMP2 o--b
ENSG00000198492 YTHDF2 o--a
ENSG00000134308 YWHAQ o+-
ENSG00000175893 ZDHHC21 o++a
ENSG00000185650 ZFP36L1 o-o
ENSG00000019995 ZRANB1 NonAssociatedWithProgression