PEACHi
GeneSet V$OCT1_06 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -4.3 0.01708 52.0 6.0 0.99
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000176020 AMIGO3 oo-
ENSG00000101935 AMMECR1 o--b
ENSG00000134287 ARF3 o--a
ENSG00000104763 ASAH1 NonAssociatedWithProgression
ENSG00000143153 ATP1B1 -oo
ENSG00000070961 ATP2B1 +-o
ENSG00000135390 ATP5G2 oo-
ENSG00000198604 BAZ1A NonAssociatedWithProgression
ENSG00000171791 BCL2 NonAssociatedWithProgression
ENSG00000110619 CARS +oo
ENSG00000078699 CBFA2T2 o--a
ENSG00000163171 CDC42EP3 NonAssociatedWithProgression
ENSG00000173575 CHD2 o--b
ENSG00000177200 CHD9 o--a
ENSG00000203668 CHML o++b
ENSG00000144021 CIAO1 -+o
ENSG00000102805 CLN5 NonAssociatedWithProgression
ENSG00000214078 CPNE1 o--b
ENSG00000146592 CREB5 +oo
ENSG00000143387 CTSK oo+
ENSG00000157326 DHRS4 o--b
ENSG00000080845 DLGAP4 NonAssociatedWithProgression
ENSG00000143507 DUSP10 NonAssociatedWithProgression
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000161960 EIF4A1 -o-
ENSG00000109911 ELP4 NonAssociatedWithProgression
ENSG00000100393 EP300 o++b
ENSG00000109670 FBXW7 o+-
ENSG00000114861 FOXP1 oo-
ENSG00000119514 GALNT12 NonAssociatedWithProgression
ENSG00000142252 GEMIN7 o--b
ENSG00000196277 GRM7 NonAssociatedWithProgression
ENSG00000132475 H3F3B o--b
ENSG00000163349 HIPK1 NonAssociatedWithProgression
ENSG00000182742 HOXB4 NonAssociatedWithProgression
ENSG00000040933 INPP4A NonAssociatedWithProgression
ENSG00000177508 IRX3 oo-
ENSG00000178502 KLHL11 NonAssociatedWithProgression
ENSG00000175928 LRRN1 o+o
ENSG00000240053 LY6G5B ---
ENSG00000012983 MAP4K5 +o+
ENSG00000204406 MBD5 -+o
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000232119 MCTS1 -+o
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000112031 MTRF1L o--b
ENSG00000124151 NCOA3 o+o
ENSG00000162599 NFIA NonAssociatedWithProgression
ENSG00000147862 NFIB NonAssociatedWithProgression
ENSG00000120837 NFYB o-o
ENSG00000087095 NLK oo+
ENSG00000213281 NRAS o--b
ENSG00000165671 NSD1 NonAssociatedWithProgression
ENSG00000115507 OTX1 NonAssociatedWithProgression
ENSG00000141456 PELP1 o--a
ENSG00000124299 PEPD o--b
ENSG00000102096 PIM2 NonAssociatedWithProgression
ENSG00000144283 PKP4 NonAssociatedWithProgression
ENSG00000181690 PLAG1 oo-
ENSG00000136480 POLG2 NonAssociatedWithProgression
ENSG00000137492 PRKRIR NonAssociatedWithProgression
ENSG00000196396 PTPN1 +oo
ENSG00000089902 RCOR1 o-o
ENSG00000084093 REST NonAssociatedWithProgression
ENSG00000117748 RPA2 oo-
ENSG00000182568 SATB1 o--a
ENSG00000156304 SFRS15 ---
ENSG00000131171 SH3BGRL o++b
ENSG00000080493 SLC4A4 -+o
ENSG00000135250 SRPK2 o-o
ENSG00000054654 SYNE2 o--b
ENSG00000172465 TCEAL1 oo+
ENSG00000140332 TLE3 ---
ENSG00000078804 TP53INP2 NonAssociatedWithProgression
ENSG00000124496 TRERF1 --o
ENSG00000048028 USP28 -+o
ENSG00000220205 VAMP2 o--b
ENSG00000136709 WDR33 +o+
ENSG00000047188 YTHDC2 NonAssociatedWithProgression
ENSG00000205189 ZBTB10 NonAssociatedWithProgression
ENSG00000179588 ZFPM1 ---
ENSG00000178764 ZHX2 NonAssociatedWithProgression
ENSG00000019995 ZRANB1 NonAssociatedWithProgression