PEACHi
GeneSet V$GATA6_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
+-o -3.7 0.03976 52.0 7.0 1.63
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000165272 AQP3 o--b
ENSG00000074370 ATP2A3 o--b
ENSG00000113916 BCL6 +-o
ENSG00000136717 BIN1 --o
ENSG00000172331 BPGM o--b
ENSG00000159388 BTG2 o-o
ENSG00000124920 C11orf9 -oo
ENSG00000101474 C20orf3 o+o
ENSG00000151014 CCRN4L o--a
ENSG00000163171 CDC42EP3 NonAssociatedWithProgression
ENSG00000146592 CREB5 +oo
ENSG00000062485 CS +-o
ENSG00000102974 CTCF o--b
ENSG00000139734 DIAPH3 NonAssociatedWithProgression
ENSG00000107099 DOCK8 NonAssociatedWithProgression
ENSG00000114346 ECT2 NonAssociatedWithProgression
ENSG00000111674 ENO2 o--a
ENSG00000244405 ETV5 +-o
ENSG00000139083 ETV6 o++a
ENSG00000114861 FOXP1 oo-
ENSG00000163328 GPR155 -oo
ENSG00000183134 GPR44 ---
ENSG00000120093 HOXB3 oo+
ENSG00000115461 IGFBP5 NonAssociatedWithProgression
ENSG00000140575 IQGAP1 NonAssociatedWithProgression
ENSG00000142856 ITGB3BP -+o
ENSG00000150995 ITPR1 o++b
ENSG00000008083 JARID2 o-o
ENSG00000118922 KLF12 o+o
ENSG00000116678 LEPR NonAssociatedWithProgression
ENSG00000169756 LIMS1 -+o
ENSG00000118308 LRMP o--a
ENSG00000197879 MYO1C ---
ENSG00000183691 NOG +-o
ENSG00000213281 NRAS o--b
ENSG00000134686 PHC2 ---
ENSG00000171033 PKIA o++a
ENSG00000126003 PLAGL2 +-o
ENSG00000101346 POFUT1 -oo
ENSG00000110777 POU2AF1 oo+
ENSG00000175175 PPM1E -oo
ENSG00000129084 PSMA1 o--a
ENSG00000144724 PTPRG NonAssociatedWithProgression
ENSG00000055917 PUM2 o-o
ENSG00000108557 RAI1 o--b
ENSG00000138835 RGS3 o++a
ENSG00000198963 RORB NonAssociatedWithProgression
ENSG00000124813 RUNX2 +oo
ENSG00000165821 SALL2 o--b
ENSG00000136603 SKIL NonAssociatedWithProgression
ENSG00000028528 SNX1 o++b
ENSG00000121067 SPOP o--b
ENSG00000187678 SPRY4 +-o
ENSG00000196935 SRGAP1 o++a
ENSG00000157625 TAB3 o+o
ENSG00000147526 TACC1 o+o
ENSG00000118707 TGIF2 ---
ENSG00000151923 TIAL1 o+o
ENSG00000106829 TLE4 NonAssociatedWithProgression
ENSG00000092445 TYRO3 o-+
ENSG00000186591 UBE2H NonAssociatedWithProgression
ENSG00000183696 UPP1 NonAssociatedWithProgression
ENSG00000198373 WWP2 +-o
ENSG00000169180 XPO6 o--a
ENSG00000165804 ZNF219 ---