PEACHi
GeneSet V$ETS_Q4 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -3.8 0.01364 117.0 101.0 85.24
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000068366 ACSL4 o+-
ENSG00000115091 ACTR3 o+-
ENSG00000204310 AGPAT1 o--b
ENSG00000123505 AMD1 o--a
ENSG00000213983 AP1G2 ---
ENSG00000075884 ARHGAP15 -+o
ENSG00000089820 ARHGAP4 ---
ENSG00000130429 ARPC1B -+o
ENSG00000141480 ARRB2 ---
ENSG00000113273 ARSB -+o
ENSG00000156735 BAG4 ---
ENSG00000076108 BAZ2A o++b
ENSG00000147439 BIN3 o--b
ENSG00000143933 CALM2 o--a
ENSG00000127022 CANX NonAssociatedWithProgression
ENSG00000131236 CAP1 o--a
ENSG00000116489 CAPZA1 NonAssociatedWithProgression
ENSG00000153113 CAST o+o
ENSG00000129993 CBFA2T3 NonAssociatedWithProgression
ENSG00000169217 CD2BP2 o--a
ENSG00000105369 CD79A ---
ENSG00000173575 CHD2 o--b
ENSG00000109220 CHIC2 o++b
ENSG00000182973 CNOT10 ---
ENSG00000102879 CORO1A o--a
ENSG00000169372 CRADD o++b
ENSG00000175197 DDIT3 +-o
ENSG00000174243 DDX23 -o-
ENSG00000065357 DGKA NonAssociatedWithProgression
ENSG00000149091 DGKZ --o
ENSG00000135164 DMTF1 NonAssociatedWithProgression
ENSG00000147251 DOCK11 o++b
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000133740 E2F5 o--b
ENSG00000178982 EIF3K o+o
ENSG00000155849 ELMO1 o+o
ENSG00000120705 ETF1 o--a
ENSG00000244405 ETV5 +-o
ENSG00000162694 EXTL2 NonAssociatedWithProgression
ENSG00000130475 FCHO1 o--b
ENSG00000114861 FOXP1 oo-
ENSG00000140564 FURIN o++a
ENSG00000033327 GAB2 +o+
ENSG00000107485 GATA3 o+o
ENSG00000162676 GFI1 o-o
ENSG00000130755 GMFG NonAssociatedWithProgression
ENSG00000100938 GMPR2 -+o
ENSG00000180353 HCLS1 o--a
ENSG00000126264 HCST o-+
ENSG00000101294 HM13 o--b
ENSG00000137309 HMGA1 o--b
ENSG00000104365 IKBKB o++a
ENSG00000137070 IL11RA NonAssociatedWithProgression
ENSG00000198001 IRAK4 o--a
ENSG00000150995 ITPR1 o++b
ENSG00000171223 JUNB ---
ENSG00000069424 KCNAB2 ---
ENSG00000101350 KIF3B o--a
ENSG00000118922 KLF12 o+o
ENSG00000169926 KLF13 oo-
ENSG00000136167 LCP1 o--b
ENSG00000043462 LCP2 o++b
ENSG00000110031 LPXN -+o
ENSG00000173621 LRFN4 ---
ENSG00000175324 LSM1 o-o
ENSG00000110514 MADD o--b
ENSG00000104814 MAP4K1 NonAssociatedWithProgression
ENSG00000168067 MAP4K2 ---
ENSG00000071073 MGAT4A NonAssociatedWithProgression
ENSG00000132780 NASP o--a
ENSG00000189043 NDUFA4 -+o
ENSG00000158864 NDUFS2 --o
ENSG00000069869 NEDD4 -+o
ENSG00000011052 NME2 NonAssociatedWithProgression
ENSG00000007372 PAX6 NonAssociatedWithProgression
ENSG00000120913 PDLIM2 ---
ENSG00000196455 PIK3R4 NonAssociatedWithProgression
ENSG00000137841 PLCB2 o-+
ENSG00000140464 PML o-o
ENSG00000175482 POLD4 --o
ENSG00000198729 PPP1R14C ---
ENSG00000101445 PPP1R16B o++a
ENSG00000108819 PPP1R9B -+o
ENSG00000181929 PRKAG1 ---
ENSG00000179295 PTPN11 NonAssociatedWithProgression
ENSG00000172780 RAB43 +o+
ENSG00000101146 RAE1 -o-
ENSG00000123728 RAP2C o++b
ENSG00000173933 RBM4 o--a
ENSG00000076067 RBMS2 NonAssociatedWithProgression
ENSG00000169220 RGS14 o--b
ENSG00000138835 RGS3 o++a
ENSG00000104140 RHOV ---
ENSG00000100599 RIN3 o--a
ENSG00000149273 RPS3 o--b
ENSG00000176986 SEC24C ---
ENSG00000058262 SEC61A1 ---
ENSG00000180096 SEPT1 ---
ENSG00000185187 SIGIRR o--b
ENSG00000162695 SLC30A7 o+o
ENSG00000133065 SLC41A1 --o
ENSG00000109062 SLC9A3R1 o--a
ENSG00000181804 SLC9A9 o++b
ENSG00000197157 SND1 ---
ENSG00000182934 SRPR o--a
ENSG00000007341 ST7L -oo
ENSG00000173757 STAT5B ---
ENSG00000165209 STRBP --o
ENSG00000113649 TCERG1 o--a
ENSG00000140262 TCF12 o--a
ENSG00000134900 TPP2 o+o
ENSG00000146063 TRIM41 +-o
ENSG00000185651 UBE2L3 o--b
ENSG00000140455 USP3 oo-
ENSG00000141968 VAV1 o--a
ENSG00000120008 WDR11 o+o
ENSG00000186660 ZFP91 +-o