PEACHi
GeneSet V$CREBP1_Q2 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.2 0.03856 75.0 57.0 44.29
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000159842 ABR oo+
ENSG00000204310 AGPAT1 o--b
ENSG00000135541 AHI1 NonAssociatedWithProgression
ENSG00000185883 ATP6V0C o--b
ENSG00000204427 BAT5 +o+
ENSG00000119866 BCL11A ---
ENSG00000099968 BCL2L13 oo+
ENSG00000136717 BIN1 --o
ENSG00000157764 BRAF oo-
ENSG00000124920 C11orf9 -oo
ENSG00000119669 C14orf4 NonAssociatedWithProgression
ENSG00000143933 CALM2 o--a
ENSG00000122565 CBX3 o--a
ENSG00000141570 CBX8 ---
ENSG00000171097 CCBL1 NonAssociatedWithProgression
ENSG00000198087 CD2AP NonAssociatedWithProgression
ENSG00000172216 CEBPB +-o
ENSG00000123989 CHPF ---
ENSG00000095794 CREM o+o
ENSG00000215301 DDX3X oo-
ENSG00000174953 DHX36 NonAssociatedWithProgression
ENSG00000184047 DIABLO o--a
ENSG00000119689 DLST o--a
ENSG00000120129 DUSP1 o--a
ENSG00000167658 EEF2 oo-
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000066044 ELAVL1 NonAssociatedWithProgression
ENSG00000012660 ELOVL5 NonAssociatedWithProgression
ENSG00000105722 ERF ---
ENSG00000170345 FOS NonAssociatedWithProgression
ENSG00000125740 FOSB +-o
ENSG00000178950 GAK o--a
ENSG00000198814 GK -oo
ENSG00000087460 GNAS NonAssociatedWithProgression
ENSG00000168243 GNG4 o--a
ENSG00000204590 GNL1 o--a
ENSG00000181773 GPR3 ---
ENSG00000003147 ICA1 NonAssociatedWithProgression
ENSG00000125968 ID1 o--a
ENSG00000117318 ID3 ---
ENSG00000104365 IKBKB o++a
ENSG00000071243 ING3 o--b
ENSG00000169926 KLF13 oo-
ENSG00000205629 LCMT1 --o
ENSG00000143013 LMO4 -+o
ENSG00000049323 LTBP1 -oo
ENSG00000073803 MAP3K13 o++a
ENSG00000152601 MBNL1 NonAssociatedWithProgression
ENSG00000076706 MCAM o-o
ENSG00000140406 MESDC1 +oo
ENSG00000204568 MRPS18B o--a
ENSG00000196712 NF1 o+o
ENSG00000126883 NUP214 NonAssociatedWithProgression
ENSG00000117859 OSBPL9 o++b
ENSG00000007168 PAFAH1B1 o+-
ENSG00000179094 PER1 ---
ENSG00000224201 PNMA6A NonAssociatedWithProgression
ENSG00000138398 PPIG o--b
ENSG00000100614 PPM1A o--a
ENSG00000204569 PPP1R10 o--b
ENSG00000125503 PPP1R12C o--a
ENSG00000087074 PPP1R15A ---
ENSG00000221914 PPP2R2A o--b
ENSG00000204576 PRR3 o--b
ENSG00000175582 RAB6A o++b
ENSG00000108557 RAI1 o--b
ENSG00000153201 RANBP2 o+o
ENSG00000101773 RBBP8 NonAssociatedWithProgression
ENSG00000076067 RBMS2 NonAssociatedWithProgression
ENSG00000173653 RCE1 o--b
ENSG00000204227 RING1 o--a
ENSG00000204308 RNF5 o--b
ENSG00000160753 RUSC1 o-o
ENSG00000198794 SCAMP5 ---
ENSG00000117118 SDHB NonAssociatedWithProgression
ENSG00000163904 SENP2 o--a
ENSG00000170145 SIK2 o--a
ENSG00000148339 SLC25A25 ---
ENSG00000134294 SLC38A2 oo-
ENSG00000170365 SMAD1 o++a
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000063176 SPHK2 o-o
ENSG00000168610 STAT3 o--b
ENSG00000118707 TGIF2 ---
ENSG00000126351 THRA --o
ENSG00000054118 THRAP3 o--a
ENSG00000078804 TP53INP2 NonAssociatedWithProgression
ENSG00000126602 TRAP1 o--a
ENSG00000173334 TRIB1 o--b
ENSG00000165006 UBAP1 o-o
ENSG00000188021 UBQLN2 +oo
ENSG00000128564 VGF NonAssociatedWithProgression
ENSG00000185222 WBP5 NonAssociatedWithProgression
ENSG00000136758 YME1L1 NonAssociatedWithProgression
ENSG00000067646 ZFY NonAssociatedWithProgression
ENSG00000096654 ZNF184 +o+
ENSG00000173276 ZNF295 oo-
ENSG00000165244 ZNF367 NonAssociatedWithProgression
ENSG00000074755 ZZEF1 ---