PEACHi
GeneSet V$ATF6_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.4 0.04965 51.0 5.0 0.97
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000168374 ARF4 o+o
ENSG00000204256 BRD2 o--b
ENSG00000158636 C11orf30 NonAssociatedWithProgression
ENSG00000095794 CREM o+o
ENSG00000108406 DHX40 oo-
ENSG00000119689 DLST o--a
ENSG00000135924 DNAJB2 ---
ENSG00000120875 DUSP4 ---
ENSG00000120738 EGR1 NonAssociatedWithProgression
ENSG00000161960 EIF4A1 -o-
ENSG00000120690 ELF1 o--b
ENSG00000105722 ERF ---
ENSG00000139083 ETV6 o++a
ENSG00000107862 GBF1 o-o
ENSG00000179562 GCC1 ---
ENSG00000151892 GFRA1 NonAssociatedWithProgression
ENSG00000168243 GNG4 o--a
ENSG00000173230 GOLGB1 o--b
ENSG00000177885 GRB2 NonAssociatedWithProgression
ENSG00000003147 ICA1 NonAssociatedWithProgression
ENSG00000177508 IRX3 oo-
ENSG00000130522 JUND o--b
ENSG00000151079 KCNA6 NonAssociatedWithProgression
ENSG00000105438 KDELR1 NonAssociatedWithProgression
ENSG00000136240 KDELR2 o--b
ENSG00000169926 KLF13 oo-
ENSG00000182909 LENG9 ---
ENSG00000143013 LMO4 -+o
ENSG00000110514 MADD o--b
ENSG00000204568 MRPS18B o--a
ENSG00000095380 NANS -+o
ENSG00000125820 NKX2-2 o-+
ENSG00000110048 OSBP o+o
ENSG00000179094 PER1 ---
ENSG00000111752 PHC1 -oo
ENSG00000204569 PPP1R10 o--b
ENSG00000104960 PTOV1 o-o
ENSG00000143365 RORC o--b
ENSG00000142186 SCYL1 -o-
ENSG00000100934 SEC23A o++b
ENSG00000150961 SEC24D NonAssociatedWithProgression
ENSG00000027869 SH2D2A o--b
ENSG00000170145 SIK2 o--a
ENSG00000092096 SLC22A17 ---
ENSG00000145740 SLC30A5 o+o
ENSG00000127526 SLC35E1 o--a
ENSG00000165915 SLC39A13 ---
ENSG00000185591 SP1 o--a
ENSG00000153037 SRP19 NonAssociatedWithProgression
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000168610 STAT3 o--b
ENSG00000135316 SYNCRIP o--b
ENSG00000132718 SYT11 NonAssociatedWithProgression
ENSG00000068323 TFE3 o--a
ENSG00000140332 TLE3 ---
ENSG00000107854 TNKS2 o-+
ENSG00000198900 TOP1 o+o
ENSG00000133112 TPT1 oo-
ENSG00000204599 TRIM39 oo-
ENSG00000144935 TRPC1 NonAssociatedWithProgression
ENSG00000092445 TYRO3 o-+
ENSG00000165280 VCP o+-
ENSG00000108039 XPNPEP1 o++b
ENSG00000067646 ZFY NonAssociatedWithProgression