PEACHi
GeneSet V$AP2_Q6_01 (TFmiRNA_Targets.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.1 0.03919 84.0 63.0 49.61
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000114739 ACVR2B +-o
ENSG00000159346 ADIPOR1 NonAssociatedWithProgression
ENSG00000140350 ANP32A o--a
ENSG00000105290 APLP1 oo+
ENSG00000134287 ARF3 o--a
ENSG00000117713 ARID1A o--b
ENSG00000086062 B4GALT1 ---
ENSG00000105552 BCAT2 o--a
ENSG00000113916 BCL6 +-o
ENSG00000183337 BCOR o--a
ENSG00000112308 C6orf62 o-o
ENSG00000164970 C9orf25 NonAssociatedWithProgression
ENSG00000108509 CAMTA2 --o
ENSG00000113328 CCNG1 +o+
ENSG00000143126 CELSR2 o++a
ENSG00000111642 CHD4 o--b
ENSG00000079432 CIC NonAssociatedWithProgression
ENSG00000099622 CIRBP o--b
ENSG00000173786 CNP ---
ENSG00000107864 CPEB3 o++b
ENSG00000160917 CPSF4 o--b
ENSG00000008405 CRY1 NonAssociatedWithProgression
ENSG00000102974 CTCF o--b
ENSG00000171604 CXXC5 o+-
ENSG00000113758 DBN1 NonAssociatedWithProgression
ENSG00000128191 DGCR8 NonAssociatedWithProgression
ENSG00000082458 DLG3 NonAssociatedWithProgression
ENSG00000080845 DLGAP4 NonAssociatedWithProgression
ENSG00000104936 DMPK ---
ENSG00000119772 DNMT3A o-o
ENSG00000138101 DTNB NonAssociatedWithProgression
ENSG00000110321 EIF4G2 o+-
ENSG00000154928 EPHB1 -oo
ENSG00000105722 ERF ---
ENSG00000164896 FASTK o--a
ENSG00000102302 FGD1 NonAssociatedWithProgression
ENSG00000106080 FKBP14 -+o
ENSG00000184922 FMNL1 NonAssociatedWithProgression
ENSG00000187239 FNBP1 o--b
ENSG00000139433 GLTP NonAssociatedWithProgression
ENSG00000181773 GPR3 ---
ENSG00000198055 GRK6 ---
ENSG00000115677 HDLBP o--a
ENSG00000164683 HEY1 +o+
ENSG00000137825 ITPKA o--b
ENSG00000170049 KCNAB3 ---
ENSG00000055118 KCNH2 -oo
ENSG00000084731 KIF3C ---
ENSG00000169926 KLF13 oo-
ENSG00000198728 LDB1 o--b
ENSG00000140406 MESDC1 +oo
ENSG00000168282 MGAT2 o--b
ENSG00000161013 MGAT4B ---
ENSG00000198408 MGEA5 o++b
ENSG00000101752 MIB1 NonAssociatedWithProgression
ENSG00000099875 MKNK2 o--b
ENSG00000005483 MLL5 +oo
ENSG00000108292 MLLT6 o--a
ENSG00000109919 MTCH2 o-o
ENSG00000133026 MYH10 o--a
ENSG00000140396 NCOA2 NonAssociatedWithProgression
ENSG00000198646 NCOA6 o--b
ENSG00000067141 NEO1 o++a
ENSG00000066136 NFYC NonAssociatedWithProgression
ENSG00000106459 NRF1 NonAssociatedWithProgression
ENSG00000180304 OAZ2 o+o
ENSG00000070756 PABPC1 o--b
ENSG00000090621 PABPC4 o--a
ENSG00000162073 PAQR4 NonAssociatedWithProgression
ENSG00000170525 PFKFB3 o--a
ENSG00000112511 PHF1 o--b
ENSG00000043143 PHF15 o--b
ENSG00000073921 PICALM +o+
ENSG00000126003 PLAGL2 +-o
ENSG00000101346 POFUT1 -oo
ENSG00000175175 PPM1E -oo
ENSG00000066027 PPP2R5A o--b
ENSG00000112655 PTK7 o--a
ENSG00000187514 PTMA o--b
ENSG00000111737 RAB35 o--a
ENSG00000164754 RAD21 o--b
ENSG00000138698 RAP1GDS1 NonAssociatedWithProgression
ENSG00000108352 RAPGEFL1 o--a
ENSG00000068831 RASGRP2 o--a
ENSG00000105538 RASIP1 o-o
ENSG00000004534 RBM6 NonAssociatedWithProgression
ENSG00000121039 RDH10 NonAssociatedWithProgression
ENSG00000132005 RFX1 ---
ENSG00000103549 RNF40 o--a
ENSG00000155287 SLC25A28 o--b
ENSG00000066117 SMARCD1 NonAssociatedWithProgression
ENSG00000004866 ST7 NonAssociatedWithProgression
ENSG00000117632 STMN1 o--b
ENSG00000125755 SYMPK ---
ENSG00000138162 TACC2 o++b
ENSG00000132604 TERF2 o--a
ENSG00000087510 TFAP2C o--a
ENSG00000090447 TFAP4 o--b
ENSG00000112561 TFEB ---
ENSG00000149582 TMEM25 -+o
ENSG00000130726 TRIM28 o--a
ENSG00000204599 TRIM39 oo-
ENSG00000108106 UBE2S o--a
ENSG00000108312 UBTF o--a
ENSG00000162702 ZNF281 o+o
ENSG00000180233 ZNRF2 o++b