PEACHi
GeneSet TRANSLATION (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -3.3 0.03473 99.0 26.0 14.06
DownRegulated -4.2 0.00203 99.0 76.0 58.46
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000090861 AARS ---
ENSG00000204574 ABCF1 o--b
ENSG00000166313 APBB1 o-o
ENSG00000142867 BCL10 o+o
ENSG00000069399 BCL3 NonAssociatedWithProgression
ENSG00000178562 CD28 o+o
ENSG00000121022 COPS5 NonAssociatedWithProgression
ENSG00000115866 DARS NonAssociatedWithProgression
ENSG00000095059 DHPS o-o
ENSG00000108963 DPH1 NonAssociatedWithProgression
ENSG00000156508 EEF1A1 o--a
ENSG00000103319 EEF2K o++a
ENSG00000173812 EIF1 +-o
ENSG00000173674 EIF1AX ---
ENSG00000114784 EIF1B NonAssociatedWithProgression
ENSG00000144895 EIF2A o+-
ENSG00000086232 EIF2AK1 NonAssociatedWithProgression
ENSG00000172071 EIF2AK3 NonAssociatedWithProgression
ENSG00000128829 EIF2AK4 o++b
ENSG00000111361 EIF2B1 -+o
ENSG00000119718 EIF2B2 o--a
ENSG00000070785 EIF2B3 NonAssociatedWithProgression
ENSG00000115211 EIF2B4 o-o
ENSG00000145191 EIF2B5 ---
ENSG00000092847 EIF2C1 -+o
ENSG00000130741 EIF2S3 o--a
ENSG00000107581 EIF3A NonAssociatedWithProgression
ENSG00000106263 EIF3B o--a
ENSG00000184110 EIF3C o--b
ENSG00000100353 EIF3D o--a
ENSG00000104408 EIF3E +-o
ENSG00000130811 EIF3G ---
ENSG00000147677 EIF3H o+o
ENSG00000084623 EIF3I -o-
ENSG00000104131 EIF3J oo-
ENSG00000156976 EIF4A2 o+o
ENSG00000141543 EIF4A3 NonAssociatedWithProgression
ENSG00000063046 EIF4B o--a
ENSG00000110321 EIF4G2 o+-
ENSG00000075151 EIF4G3 NonAssociatedWithProgression
ENSG00000106682 EIF4H NonAssociatedWithProgression
ENSG00000100664 EIF5 o--b
ENSG00000132507 EIF5A o--a
ENSG00000120705 ETF1 o--a
ENSG00000145982 FARS2 ---
ENSG00000140564 FURIN o++a
ENSG00000112339 HBS1L NonAssociatedWithProgression
ENSG00000132541 HRSP12 o++a
ENSG00000106211 HSPB1 o--b
ENSG00000073792 IGF2BP2 -oo
ENSG00000113520 IL4 NonAssociatedWithProgression
ENSG00000065427 KARS o-o
ENSG00000227507 LTB -o-
ENSG00000152428 MARS2 NonAssociatedWithProgression
ENSG00000086015 MAST2 o--a
ENSG00000164024 METAP1 o--b
ENSG00000159111 MRPL10 o--a
ENSG00000214026 MRPL23 ---
ENSG00000114686 MRPL3 NonAssociatedWithProgression
ENSG00000182154 MRPL41 ---
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000172590 MRPL52 oo+
ENSG00000162910 MRPL55 o--a
ENSG00000062582 MRPS24 o--a
ENSG00000125445 MRPS7 o--b
ENSG00000085760 MTIF2 -+o
ENSG00000122033 MTIF3 o+-
ENSG00000120662 MTRF1 o++b
ENSG00000196531 NACA NonAssociatedWithProgression
ENSG00000186010 NDUFA13 o-o
ENSG00000125967 NECAB3 ---
ENSG00000090621 PABPC4 o--a
ENSG00000172239 PAIP1 o--b
ENSG00000120727 PAIP2 NonAssociatedWithProgression
ENSG00000059691 PET112L -o-
ENSG00000113643 RARS NonAssociatedWithProgression
ENSG00000142676 RPL11 o--b
ENSG00000167526 RPL13 o--b
ENSG00000188846 RPL14 o--a
ENSG00000174748 RPL15 o--a
ENSG00000105640 RPL18A o-o
ENSG00000108298 RPL19 o-o
ENSG00000122026 RPL21 o--a
ENSG00000116251 RPL22 +-o
ENSG00000198242 RPL23A o--a
ENSG00000114391 RPL24 o--b
ENSG00000161970 RPL26 o-o
ENSG00000166441 RPL27A o--a
ENSG00000108107 RPL28 o--b
ENSG00000162244 RPL29 o--a
ENSG00000100316 RPL3 -o-
ENSG00000156482 RPL30 o++b
ENSG00000071082 RPL31 o-+
ENSG00000109475 RPL34 NonAssociatedWithProgression
ENSG00000136942 RPL35 o--b
ENSG00000145592 RPL37 NonAssociatedWithProgression
ENSG00000198918 RPL39 o-+
ENSG00000174444 RPL4 o--b
ENSG00000122406 RPL5 NonAssociatedWithProgression
ENSG00000089009 RPL6 o--b
ENSG00000147604 RPL7 NonAssociatedWithProgression
ENSG00000148303 RPL7A -o-
ENSG00000161016 RPL8 ---
ENSG00000163682 RPL9 NonAssociatedWithProgression
ENSG00000124614 RPS10 NonAssociatedWithProgression
ENSG00000142534 RPS11 o--a
ENSG00000112306 RPS12 o--a
ENSG00000105372 RPS19 -o-
ENSG00000140988 RPS2 o--a
ENSG00000177954 RPS27 o-o
ENSG00000149273 RPS3 o--b
ENSG00000145425 RPS3A o-o
ENSG00000129824 RPS4Y1 o--a
ENSG00000083845 RPS5 o--a
ENSG00000175634 RPS6KB2 -o-
ENSG00000170889 RPS9 o--b
ENSG00000125844 RRBP1 ---
ENSG00000109618 SEPSECS o-o
ENSG00000185187 SIGIRR o--b
ENSG00000197471 SPN o--a
ENSG00000145901 TNIP1 -o-
ENSG00000165699 TSC1 NonAssociatedWithProgression
ENSG00000123297 TSFM o+-
ENSG00000178952 TUFM o--a
ENSG00000005007 UPF1 o--b
ENSG00000140105 WARS NonAssociatedWithProgression
ENSG00000134684 YARS o--b