PEACHi
GeneSet RNA_SPLICING (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -2.9 0.03143 50.0 39.0 29.53
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000198563 BAT1 o--a
ENSG00000116752 BCAS2 o+o
ENSG00000168438 CDC40 -oo
ENSG00000101343 CRNKL1 +o+
ENSG00000150316 CWC15 NonAssociatedWithProgression
ENSG00000138231 DBR1 o--b
ENSG00000064703 DDX20 NonAssociatedWithProgression
ENSG00000174243 DDX23 -o-
ENSG00000123136 DDX39 o--b
ENSG00000204560 DHX16 NonAssociatedWithProgression
ENSG00000140829 DHX38 o--a
ENSG00000067596 DHX8 o--a
ENSG00000108883 EFTUD2 -o-
ENSG00000082516 GEMIN5 NonAssociatedWithProgression
ENSG00000152147 GEMIN6 o+o
ENSG00000142252 GEMIN7 o--b
ENSG00000046647 GEMIN8 NonAssociatedWithProgression
ENSG00000092199 HNRNPC o-o
ENSG00000116679 IVNS1ABP NonAssociatedWithProgression
ENSG00000088247 KHSRP o--b
ENSG00000175324 LSM1 o-o
ENSG00000130520 LSM4 o--a
ENSG00000164167 LSM6 NonAssociatedWithProgression
ENSG00000136937 NCBP1 o+-
ENSG00000114503 NCBP2 o--b
ENSG00000140939 NOL3 --o
ENSG00000147140 NONO o--b
ENSG00000100410 PHF5A o--b
ENSG00000130810 PPAN ---
ENSG00000138398 PPIG o--b
ENSG00000165630 PRPF18 NonAssociatedWithProgression
ENSG00000117360 PRPF3 o--a
ENSG00000105618 PRPF31 NonAssociatedWithProgression
ENSG00000112739 PRPF4B o+o
ENSG00000174231 PRPF8 o--b
ENSG00000011304 PTBP1 ---
ENSG00000205937 RNPS1 NonAssociatedWithProgression
ENSG00000164610 RP9 o-o
ENSG00000168066 SF1 o-o
ENSG00000099995 SF3A1 o+-
ENSG00000104897 SF3A2 o--b
ENSG00000183431 SF3A3 NonAssociatedWithProgression
ENSG00000087365 SF3B2 NonAssociatedWithProgression
ENSG00000189091 SF3B3 NonAssociatedWithProgression
ENSG00000143368 SF3B4 o--b
ENSG00000116560 SFPQ +-o
ENSG00000092208 SIP1 NonAssociatedWithProgression
ENSG00000164609 SLU7 o--a
ENSG00000119953 SMNDC1 +oo
ENSG00000131876 SNRPA1 o--b
ENSG00000125835 SNRPB o--a
ENSG00000125870 SNRPB2 NonAssociatedWithProgression
ENSG00000124562 SNRPC o--a
ENSG00000167088 SNRPD1 o--a
ENSG00000125743 SNRPD2 o--a
ENSG00000100028 SNRPD3 o-o
ENSG00000143977 SNRPG o+-
ENSG00000128739 SNRPN o-o
ENSG00000100603 SNW1 NonAssociatedWithProgression
ENSG00000096063 SRPK1 o--a
ENSG00000135250 SRPK2 o-o
ENSG00000133226 SRRM1 o--b
ENSG00000135316 SYNCRIP o--b
ENSG00000164548 TRA2A NonAssociatedWithProgression
ENSG00000141759 TXNL4A NonAssociatedWithProgression
ENSG00000160201 U2AF1 NonAssociatedWithProgression
ENSG00000168883 USP39 o-o
ENSG00000075292 ZNF638 o+o
ENSG00000132485 ZRANB2 o-+