PEACHi
GeneSet RNA Polymerase II Transcription (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -3.2 0.01226 62.0 48.0 36.61
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000134480 CCNH -o-
ENSG00000082258 CCNT2 o-o
ENSG00000168438 CDC40 -oo
ENSG00000134058 CDK7 o+o
ENSG00000172409 CLP1 o--a
ENSG00000188986 COBRA1 o--b
ENSG00000071894 CPSF1 o--a
ENSG00000165934 CPSF2 NonAssociatedWithProgression
ENSG00000149532 CPSF7 o--a
ENSG00000101138 CSTF1 o++b
ENSG00000101811 CSTF2 o-o
ENSG00000176102 CSTF3 NonAssociatedWithProgression
ENSG00000060069 CTDP1 ---
ENSG00000140829 DHX38 o--a
ENSG00000105656 ELL o--a
ENSG00000104884 ERCC2 ---
ENSG00000163161 ERCC3 o-o
ENSG00000140307 GTF2A2 NonAssociatedWithProgression
ENSG00000137947 GTF2B NonAssociatedWithProgression
ENSG00000153767 GTF2E1 o++b
ENSG00000197265 GTF2E2 NonAssociatedWithProgression
ENSG00000125651 GTF2F1 o--a
ENSG00000188342 GTF2F2 NonAssociatedWithProgression
ENSG00000110768 GTF2H1 o++b
ENSG00000145736 GTF2H2 o++b
ENSG00000111358 GTF2H3 NonAssociatedWithProgression
ENSG00000181817 LSM10 NonAssociatedWithProgression
ENSG00000155858 LSM11 NonAssociatedWithProgression
ENSG00000162385 MAGOH o--b
ENSG00000136937 NCBP1 o+-
ENSG00000114503 NCBP2 o--b
ENSG00000086102 NFX1 NonAssociatedWithProgression
ENSG00000167005 NUDT21 NonAssociatedWithProgression
ENSG00000100836 PABPN1 o--a
ENSG00000090060 PAPOLA NonAssociatedWithProgression
ENSG00000165494 PCF11 oo-
ENSG00000181222 POLR2A ---
ENSG00000047315 POLR2B +oo
ENSG00000102978 POLR2C NonAssociatedWithProgression
ENSG00000144231 POLR2D o--b
ENSG00000100142 POLR2F NonAssociatedWithProgression
ENSG00000168002 POLR2G NonAssociatedWithProgression
ENSG00000163882 POLR2H o-o
ENSG00000105258 POLR2I --o
ENSG00000005075 POLR2J ---
ENSG00000177700 POLR2L o-o
ENSG00000131795 RBM8A +-o
ENSG00000204356 RDBP o-o
ENSG00000111880 RNGTT NonAssociatedWithProgression
ENSG00000101654 RNMT NonAssociatedWithProgression
ENSG00000205937 RNPS1 NonAssociatedWithProgression
ENSG00000163950 SLBP NonAssociatedWithProgression
ENSG00000125835 SNRPB o--a
ENSG00000100028 SNRPD3 o-o
ENSG00000182004 SNRPE NonAssociatedWithProgression
ENSG00000143977 SNRPG o+-
ENSG00000133226 SRRM1 o--b
ENSG00000136450 SRSF1 -o-
ENSG00000116754 SRSF11 NonAssociatedWithProgression
ENSG00000161547 SRSF2 oo-
ENSG00000112081 SRSF3 +-o
ENSG00000116350 SRSF4 o--a
ENSG00000100650 SRSF5 o--b
ENSG00000124193 SRSF6 +-o
ENSG00000115875 SRSF7 o--b
ENSG00000111786 SRSF9 -o-
ENSG00000149136 SSRP1 o--b
ENSG00000092201 SUPT16H o--a
ENSG00000213246 SUPT4H1 o--a
ENSG00000196235 SUPT5H o--b
ENSG00000147133 TAF1 NonAssociatedWithProgression
ENSG00000166337 TAF10 o--a
ENSG00000064995 TAF11 o--b
ENSG00000120656 TAF12 o--a
ENSG00000197780 TAF13 o+o
ENSG00000130699 TAF4 o++b
ENSG00000141384 TAF4B NonAssociatedWithProgression
ENSG00000148835 TAF5 o--a
ENSG00000106290 TAF6 NonAssociatedWithProgression
ENSG00000085231 TAF9 o+o
ENSG00000112592 TBP NonAssociatedWithProgression
ENSG00000187735 TCEA1 NonAssociatedWithProgression
ENSG00000154582 TCEB1 NonAssociatedWithProgression
ENSG00000103363 TCEB2 o--a
ENSG00000011007 TCEB3 NonAssociatedWithProgression
ENSG00000101158 TH1L o--b
ENSG00000183684 THOC4 -o-
ENSG00000160201 U2AF1 NonAssociatedWithProgression
ENSG00000063244 U2AF2 ---
ENSG00000125351 UPF3B NonAssociatedWithProgression
ENSG00000185049 WHSC2 o--b
ENSG00000142528 ZNF473 o--b