PEACHi
GeneSet RIBONUCLEOPROTEIN_COMPLEX (GO_-_Cellular_Component.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -4.6 0.00173 80.0 25.0 11.36
DownRegulated -3.8 0.00384 80.0 62.0 47.24
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000100823 APEX1 NonAssociatedWithProgression
ENSG00000166181 API5 NonAssociatedWithProgression
ENSG00000204842 ATXN2 o+o
ENSG00000116752 BCAS2 o+o
ENSG00000168438 CDC40 -oo
ENSG00000174243 DDX23 -o-
ENSG00000110367 DDX6 o--b
ENSG00000109606 DHX15 +-o
ENSG00000067596 DHX8 o--a
ENSG00000130826 DKC1 o--b
ENSG00000108883 EFTUD2 -o-
ENSG00000134001 EIF2S1 o--a
ENSG00000112425 EPM2A +oo
ENSG00000149806 FAU o-o
ENSG00000102081 FMR1 o+-
ENSG00000114416 FXR1 ---
ENSG00000177733 HNRNPA0 NonAssociatedWithProgression
ENSG00000135486 HNRNPA1 o+-
ENSG00000122566 HNRNPA2B1 oo-
ENSG00000092199 HNRNPC o-o
ENSG00000104824 HNRNPL NonAssociatedWithProgression
ENSG00000125944 HNRNPR NonAssociatedWithProgression
ENSG00000153187 HNRNPU o--b
ENSG00000152795 HNRPDL oo-
ENSG00000116679 IVNS1ABP NonAssociatedWithProgression
ENSG00000152969 JAKMIP1 -+o
ENSG00000111615 KRR1 o--b
ENSG00000130520 LSM4 o--a
ENSG00000164167 LSM6 NonAssociatedWithProgression
ENSG00000179455 MKRN3 NonAssociatedWithProgression
ENSG00000159111 MRPL10 o--a
ENSG00000183093 MRPL12 ---
ENSG00000214026 MRPL23 ---
ENSG00000185608 MRPL40 NonAssociatedWithProgression
ENSG00000182154 MRPL41 ---
ENSG00000198015 MRPL42 o--a
ENSG00000111639 MRPL51 NonAssociatedWithProgression
ENSG00000172590 MRPL52 oo+
ENSG00000162910 MRPL55 o--a
ENSG00000048544 MRPS10 -o-
ENSG00000181991 MRPS11 o--a
ENSG00000128626 MRPS12 o--a
ENSG00000116898 MRPS15 o--b
ENSG00000182180 MRPS16 --o
ENSG00000096080 MRPS18A NonAssociatedWithProgression
ENSG00000163319 MRPS18C NonAssociatedWithProgression
ENSG00000175110 MRPS22 o--a
ENSG00000062582 MRPS24 o--a
ENSG00000147586 MRPS28 o+o
ENSG00000061794 MRPS35 o--a
ENSG00000134056 MRPS36 -+o
ENSG00000184967 NOC4L o--a
ENSG00000165271 NOL6 o--b
ENSG00000108256 NUFIP2 --o
ENSG00000090470 PDCD7 NonAssociatedWithProgression
ENSG00000100410 PHF5A o--b
ENSG00000104356 POP1 o+o
ENSG00000105171 POP4 NonAssociatedWithProgression
ENSG00000172336 POP7 o--a
ENSG00000171960 PPIH o-o
ENSG00000165630 PRPF18 NonAssociatedWithProgression
ENSG00000105618 PRPF31 NonAssociatedWithProgression
ENSG00000174231 PRPF8 o--b
ENSG00000129084 PSMA1 o--a
ENSG00000011304 PTBP1 ---
ENSG00000110958 PTGES3 o--b
ENSG00000125970 RALY o--a
ENSG00000239306 RBM14 o--a
ENSG00000142541 RPL13A NonAssociatedWithProgression
ENSG00000174748 RPL15 o--a
ENSG00000131469 RPL27 NonAssociatedWithProgression
ENSG00000148303 RPL7A -o-
ENSG00000163682 RPL9 NonAssociatedWithProgression
ENSG00000148688 RPP30 NonAssociatedWithProgression
ENSG00000152464 RPP38 o+o
ENSG00000124787 RPP40 NonAssociatedWithProgression
ENSG00000142534 RPS11 o--a
ENSG00000198034 RPS4X NonAssociatedWithProgression
ENSG00000171863 RPS7 o--a
ENSG00000125844 RRBP1 ---
ENSG00000120742 SERP1 --o
ENSG00000168066 SF1 o-o
ENSG00000099995 SF3A1 o+-
ENSG00000104897 SF3A2 o--b
ENSG00000183431 SF3A3 NonAssociatedWithProgression
ENSG00000087365 SF3B2 NonAssociatedWithProgression
ENSG00000189091 SF3B3 NonAssociatedWithProgression
ENSG00000143368 SF3B4 o--b
ENSG00000092208 SIP1 NonAssociatedWithProgression
ENSG00000163950 SLBP NonAssociatedWithProgression
ENSG00000164609 SLU7 o--a
ENSG00000070366 SMG6 ---
ENSG00000119953 SMNDC1 +oo
ENSG00000077312 SNRPA o--a
ENSG00000131876 SNRPA1 o--b
ENSG00000125835 SNRPB o--a
ENSG00000125870 SNRPB2 NonAssociatedWithProgression
ENSG00000124562 SNRPC o--a
ENSG00000167088 SNRPD1 o--a
ENSG00000125743 SNRPD2 o--a
ENSG00000100028 SNRPD3 o-o
ENSG00000143977 SNRPG o+-
ENSG00000128739 SNRPN o-o
ENSG00000100603 SNW1 NonAssociatedWithProgression
ENSG00000213523 SRA1 NonAssociatedWithProgression
ENSG00000140319 SRP14 NonAssociatedWithProgression
ENSG00000153037 SRP19 NonAssociatedWithProgression
ENSG00000167881 SRP68 o-+
ENSG00000138385 SSB NonAssociatedWithProgression
ENSG00000129566 TEP1 +o+
ENSG00000132109 TRIM21 NonAssociatedWithProgression
ENSG00000116747 TROVE2 NonAssociatedWithProgression
ENSG00000141759 TXNL4A NonAssociatedWithProgression
ENSG00000160201 U2AF1 NonAssociatedWithProgression
ENSG00000063244 U2AF2 ---
ENSG00000011260 UTP18 NonAssociatedWithProgression
ENSG00000120800 UTP20 NonAssociatedWithProgression
ENSG00000139168 ZCRB1 o++b
ENSG00000100319 ZMAT5 ---