PEACHi
GeneSet REGULATION_OF_CELL_PROLIFERATION (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -3.3 0.03669 98.0 7.0 1.86
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000136754 ABI1 NonAssociatedWithProgression
ENSG00000164252 AGGF1 +o+
ENSG00000204472 AIF1 o--a
ENSG00000214274 ANG o++b
ENSG00000134982 APC NonAssociatedWithProgression
ENSG00000116584 ARHGEF2 o--b
ENSG00000130770 ATPIF1 o++a
ENSG00000027847 B4GALT7 o--a
ENSG00000163930 BAP1 o--b
ENSG00000168283 BMI1 NonAssociatedWithProgression
ENSG00000204217 BMPR2 NonAssociatedWithProgression
ENSG00000012048 BRCA1 NonAssociatedWithProgression
ENSG00000133639 BTG1 NonAssociatedWithProgression
ENSG00000159388 BTG2 o-o
ENSG00000154640 BTG3 NonAssociatedWithProgression
ENSG00000014216 CAPN1 ---
ENSG00000126247 CAPNS1 o++a
ENSG00000115355 CCDC88A +o+
ENSG00000135535 CD164 oo-
ENSG00000178562 CD28 o+o
ENSG00000198851 CD3E o--a
ENSG00000196776 CD47 NonAssociatedWithProgression
ENSG00000110651 CD81 o--b
ENSG00000151465 CDC123 NonAssociatedWithProgression
ENSG00000101224 CDC25B o--a
ENSG00000094804 CDC6 NonAssociatedWithProgression
ENSG00000097046 CDC7 NonAssociatedWithProgression
ENSG00000144354 CDCA7 NonAssociatedWithProgression
ENSG00000185324 CDK10 o--a
ENSG00000123374 CDK2 oo-
ENSG00000135446 CDK4 o--a
ENSG00000105810 CDK6 o--a
ENSG00000124762 CDKN1A oo-
ENSG00000123080 CDKN2C o-o
ENSG00000100526 CDKN3 NonAssociatedWithProgression
ENSG00000100532 CGRRF1 o+o
ENSG00000149554 CHEK1 o+o
ENSG00000129749 CHRNA10 o--a
ENSG00000144021 CIAO1 -+o
ENSG00000155508 CNOT8 oo-
ENSG00000182871 COL18A1 NonAssociatedWithProgression
ENSG00000159692 CTBP1 NonAssociatedWithProgression
ENSG00000175029 CTBP2 o++a
ENSG00000055130 CUL1 o++a
ENSG00000108094 CUL2 o+o
ENSG00000036257 CUL3 o--a
ENSG00000139842 CUL4A oo-
ENSG00000166266 CUL5 o--b
ENSG00000013573 DDX11 o--a
ENSG00000072849 DERL2 o-o
ENSG00000095059 DHPS o-o
ENSG00000151208 DLG5 o--b
ENSG00000069345 DNAJA2 o-o
ENSG00000124802 EEF1E1 NonAssociatedWithProgression
ENSG00000055332 EIF2AK2 o--a
ENSG00000142227 EMP3 o--b
ENSG00000134954 ETS1 NonAssociatedWithProgression
ENSG00000213066 FGFR1OP o+-
ENSG00000090554 FLT3LG +o+
ENSG00000037280 FLT4 NonAssociatedWithProgression
ENSG00000184481 FOXO4 --o
ENSG00000167996 FTH1 oo-
ENSG00000141013 GAS8 NonAssociatedWithProgression
ENSG00000104499 GML o++b
ENSG00000163938 GNL3 o--b
ENSG00000147437 GNRH1 o+o
ENSG00000136235 GPNMB o++b
ENSG00000233276 GPX1 ---
ENSG00000107937 GTPBP4 o--b
ENSG00000180353 HCLS1 o--a
ENSG00000185359 HGS o--b
ENSG00000185885 IFITM1 o--a
ENSG00000140443 IGF1R o++b
ENSG00000163453 IGFBP7 NonAssociatedWithProgression
ENSG00000113520 IL4 NonAssociatedWithProgression
ENSG00000153487 ING1 NonAssociatedWithProgression
ENSG00000111653 ING4 o+-
ENSG00000168395 ING5 NonAssociatedWithProgression
ENSG00000155090 KLF10 o--b
ENSG00000162337 LRP5 NonAssociatedWithProgression
ENSG00000179222 MAGED1 NonAssociatedWithProgression
ENSG00000007047 MARK4 ---
ENSG00000232119 MCTS1 -+o
ENSG00000135679 MDM2 -o-
ENSG00000198625 MDM4 o-o
ENSG00000116688 MFN2 o--b
ENSG00000070444 MNT NonAssociatedWithProgression
ENSG00000123933 MXD4 ---
ENSG00000119950 MXI1 +-o
ENSG00000136997 MYC o--b
ENSG00000187109 NAP1L1 +-o
ENSG00000158092 NCK1 o+-
ENSG00000071051 NCK2 o--b
ENSG00000164258 NDUFS4 NonAssociatedWithProgression
ENSG00000196712 NF1 o+o
ENSG00000186575 NF2 o--b
ENSG00000239672 NME1 o--a
ENSG00000011052 NME2 NonAssociatedWithProgression
ENSG00000134250 NOTCH2 o-o
ENSG00000181163 NPM1 o--b
ENSG00000213024 NUP62 o--a
ENSG00000009694 ODZ1 o+-
ENSG00000112038 OPRM1 ---
ENSG00000177425 PAWR o++b
ENSG00000083642 PDS5B NonAssociatedWithProgression
ENSG00000122194 PLG o+o
ENSG00000180228 PRKRA --o
ENSG00000137492 PRKRIR NonAssociatedWithProgression
ENSG00000171862 PTEN NonAssociatedWithProgression
ENSG00000120899 PTK2B NonAssociatedWithProgression
ENSG00000081237 PTPRC o+o
ENSG00000116260 QSOX1 o-+
ENSG00000162521 RBBP4 NonAssociatedWithProgression
ENSG00000177105 RHOG o--a
ENSG00000020633 RUNX3 o--b
ENSG00000163191 S100A11 oo-
ENSG00000197019 SERTAD1 ---
ENSG00000072195 SPEG NonAssociatedWithProgression
ENSG00000124783 SSR1 -+o
ENSG00000124356 STAMBP o--b
ENSG00000154144 TBRG1 o--b
ENSG00000136270 TBRG4 o--a
ENSG00000101190 TCFL5 o--a
ENSG00000163513 TGFBR2 +o+
ENSG00000102265 TIMP1 o--a
ENSG00000075131 TIPIN NonAssociatedWithProgression
ENSG00000117586 TNFSF4 o++a
ENSG00000141232 TOB1 NonAssociatedWithProgression
ENSG00000175274 TP53I11 ---
ENSG00000165699 TSC1 NonAssociatedWithProgression
ENSG00000165409 TSHR -o-
ENSG00000112742 TTK o--b
ENSG00000120800 UTP20 NonAssociatedWithProgression
ENSG00000112715 VEGFA +-o
ENSG00000173511 VEGFB o--b
ENSG00000134086 VHL ---
ENSG00000140105 WARS NonAssociatedWithProgression