PEACHi
GeneSet Protein folding (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o--a -2.7 0.02203 30.0 10.0 4.26
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000075624 ACTB o--b
ENSG00000185009 AP3M1 o--a
ENSG00000124198 ARFGEF2 o+o
ENSG00000166226 CCT2 o--a
ENSG00000163468 CCT3 NonAssociatedWithProgression
ENSG00000115484 CCT4 o--a
ENSG00000150753 CCT5 o--a
ENSG00000146731 CCT6A NonAssociatedWithProgression
ENSG00000135624 CCT7 ---
ENSG00000156261 CCT8 o--b
ENSG00000005812 FBXL3 o--a
ENSG00000118564 FBXL5 o-+
ENSG00000151876 FBXO4 ---
ENSG00000119402 FBXW2 +-o
ENSG00000107829 FBXW4 o--a
ENSG00000159069 FBXW5 o-o
ENSG00000109670 FBXW7 o+-
ENSG00000102910 LONP2 o--a
ENSG00000101361 NOP56 o--b
ENSG00000113068 PFDN1 o-o
ENSG00000143256 PFDN2 NonAssociatedWithProgression
ENSG00000101132 PFDN4 NonAssociatedWithProgression
ENSG00000123349 PFDN5 NonAssociatedWithProgression
ENSG00000204220 PFDN6 ---
ENSG00000204351 SKIV2L -oo
ENSG00000171530 TBCA NonAssociatedWithProgression
ENSG00000105254 TBCB NonAssociatedWithProgression
ENSG00000124659 TBCC o--a
ENSG00000141556 TBCD o--b
ENSG00000116957 TBCE o--a
ENSG00000120438 TCP1 -o-
ENSG00000167552 TUBA1A +oo
ENSG00000123416 TUBA1B NonAssociatedWithProgression
ENSG00000167553 TUBA1C o--b
ENSG00000127824 TUBA4A NonAssociatedWithProgression
ENSG00000137267 TUBB2A NonAssociatedWithProgression
ENSG00000137285 TUBB2B oo+
ENSG00000127589 TUBB4Q o--a
ENSG00000176014 TUBB6 NonAssociatedWithProgression
ENSG00000102226 USP11 o-o
ENSG00000155959 VBP1 o+-
ENSG00000088930 XRN2 NonAssociatedWithProgression