PEACHi
GeneSet NITROGEN_COMPOUND_METABOLIC_PROCESS (GO_-_Biological_Process.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o-o -3.2 0.04011 57.0 12.0 4.78
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000090861 AARS ---
ENSG00000182551 ADI1 o--a
ENSG00000142208 AKT1 ---
ENSG00000059573 ALDH18A1 o--b
ENSG00000112294 ALDH5A1 o++b
ENSG00000145020 AMT ---
ENSG00000131471 AOC3 NonAssociatedWithProgression
ENSG00000169093 ASMTL o-o
ENSG00000162174 ASRGL1 NonAssociatedWithProgression
ENSG00000128272 ATF4 o--b
ENSG00000176022 B3GALT6 o-o
ENSG00000027847 B4GALT7 o--a
ENSG00000060982 BCAT1 +-o
ENSG00000248098 BCKDHA o-o
ENSG00000083123 BCKDHB o++a
ENSG00000103507 BCKDK o--a
ENSG00000171310 CHST11 NonAssociatedWithProgression
ENSG00000175040 CHST2 NonAssociatedWithProgression
ENSG00000147119 CHST7 NonAssociatedWithProgression
ENSG00000128973 CLN6 ---
ENSG00000115866 DARS NonAssociatedWithProgression
ENSG00000095059 DHPS o-o
ENSG00000139163 ETNK1 o--a
ENSG00000151348 EXT2 NonAssociatedWithProgression
ENSG00000162694 EXTL2 NonAssociatedWithProgression
ENSG00000103876 FAH o-o
ENSG00000145982 FARS2 ---
ENSG00000136877 FPGS o--a
ENSG00000128683 GAD1 -+o
ENSG00000130005 GAMT o--b
ENSG00000131979 GCH1 +o+
ENSG00000001084 GCLC NonAssociatedWithProgression
ENSG00000023909 GCLM o+o
ENSG00000102393 GLA ---
ENSG00000138604 GLCE o++a
ENSG00000148672 GLUD1 o+o
ENSG00000182890 GLUD2 NonAssociatedWithProgression
ENSG00000159921 GNE NonAssociatedWithProgression
ENSG00000113552 GNPDA1 o++a
ENSG00000135677 GNS o-o
ENSG00000120053 GOT1 NonAssociatedWithProgression
ENSG00000125166 GOT2 o--a
ENSG00000100983 GSS NonAssociatedWithProgression
ENSG00000100577 GSTZ1 o-o
ENSG00000169919 GUSB ---
ENSG00000165704 HPRT1 NonAssociatedWithProgression
ENSG00000080824 HSP90AA1 NonAssociatedWithProgression
ENSG00000096384 HSP90AB1 o--b
ENSG00000136003 ISCU o+o
ENSG00000065427 KARS o-o
ENSG00000152428 MARS2 NonAssociatedWithProgression
ENSG00000038274 MAT2B o+o
ENSG00000131844 MCCC2 ---
ENSG00000177000 MTHFR o-o
ENSG00000124357 NAGK o-o
ENSG00000244005 NFS1 NonAssociatedWithProgression
ENSG00000181019 NQO1 NonAssociatedWithProgression
ENSG00000104904 OAZ1 -o-
ENSG00000180304 OAZ2 o+o
ENSG00000185624 P4HB o--a
ENSG00000124299 PEPD o--b
ENSG00000083444 PLOD1 --o
ENSG00000150787 PTS NonAssociatedWithProgression
ENSG00000183010 PYCR1 o-o
ENSG00000151552 QDPR NonAssociatedWithProgression
ENSG00000113643 RARS NonAssociatedWithProgression
ENSG00000132330 SCLY o++a
ENSG00000102743 SLC25A15 NonAssociatedWithProgression
ENSG00000117620 SLC35A3 NonAssociatedWithProgression
ENSG00000131389 SLC6A6 o+o
ENSG00000103257 SLC7A5 o--b
ENSG00000103064 SLC7A6 o--b
ENSG00000155465 SLC7A7 +o+
ENSG00000102172 SMS o-o
ENSG00000116096 SPR ---
ENSG00000157350 ST3GAL2 NonAssociatedWithProgression
ENSG00000064225 ST3GAL6 o++a
ENSG00000196502 SULT1A1 o--a
ENSG00000197165 SULT1A2 o--b
ENSG00000117143 UAP1 o++a
ENSG00000109814 UGDH NonAssociatedWithProgression
ENSG00000140105 WARS NonAssociatedWithProgression
ENSG00000134684 YARS o--b