PEACHi
GeneSet Mitotic M-M/G1 phases (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
o+o -3.5 0.00951 123.0 17.0 7.28
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000153207 AHCTF1 o--b
ENSG00000175279 APITD1 NonAssociatedWithProgression
ENSG00000178999 AURKB o--b
ENSG00000123810 B9D2 -o-
ENSG00000089685 BIRC5 ---
ENSG00000169679 BUB1 -o-
ENSG00000156970 BUB1B +oo
ENSG00000154473 BUB3 o--a
ENSG00000040275 CCDC99 o+-
ENSG00000093009 CDC45 o++b
ENSG00000094804 CDC6 NonAssociatedWithProgression
ENSG00000097046 CDC7 NonAssociatedWithProgression
ENSG00000134690 CDCA8 o--a
ENSG00000123374 CDK2 oo-
ENSG00000115163 CENPA o-o
ENSG00000145241 CENPC1 NonAssociatedWithProgression
ENSG00000138778 CENPE NonAssociatedWithProgression
ENSG00000117724 CENPF o--a
ENSG00000153044 CENPH oo-
ENSG00000102384 CENPI o-+
ENSG00000123219 CENPK o+o
ENSG00000120334 CENPL o--b
ENSG00000100162 CENPM o--a
ENSG00000166451 CENPN o+-
ENSG00000138092 CENPO o-+
ENSG00000188312 CENPP -oo
ENSG00000031691 CENPQ o--b
ENSG00000102901 CENPT o--b
ENSG00000175216 CKAP5 NonAssociatedWithProgression
ENSG00000074054 CLASP1 NonAssociatedWithProgression
ENSG00000163539 CLASP2 +oo
ENSG00000130779 CLIP1 o+o
ENSG00000006634 DBF4 ---
ENSG00000149636 DSN1 NonAssociatedWithProgression
ENSG00000101412 E2F1 o--b
ENSG00000007968 E2F2 o--a
ENSG00000112242 E2F3 NonAssociatedWithProgression
ENSG00000186871 ERCC6L o-o
ENSG00000112029 FBXO5 NonAssociatedWithProgression
ENSG00000112312 GMNN NonAssociatedWithProgression
ENSG00000114745 GORASP1 NonAssociatedWithProgression
ENSG00000142856 ITGB3BP -+o
ENSG00000121621 KIF18A NonAssociatedWithProgression
ENSG00000112984 KIF20A NonAssociatedWithProgression
ENSG00000137807 KIF23 o--a
ENSG00000068796 KIF2A o+o
ENSG00000142945 KIF2C o--b
ENSG00000184445 KNTC1 o+o
ENSG00000002822 MAD1L1 o-o
ENSG00000164109 MAD2L1 NonAssociatedWithProgression
ENSG00000101367 MAPRE1 o--b
ENSG00000065328 MCM10 NonAssociatedWithProgression
ENSG00000073111 MCM2 o--a
ENSG00000104738 MCM4 o--a
ENSG00000100297 MCM5 o--b
ENSG00000076003 MCM6 o--a
ENSG00000166508 MCM7 o--b
ENSG00000125885 MCM8 oo+
ENSG00000167842 MIS12 o+o
ENSG00000151725 MLF1IP NonAssociatedWithProgression
ENSG00000080986 NDC80 o++b
ENSG00000072864 NDE1 --o
ENSG00000166579 NDEL1 o++b
ENSG00000117697 NSL1 o+-
ENSG00000090273 NUDC o--a
ENSG00000143228 NUF2 NonAssociatedWithProgression
ENSG00000111581 NUP107 -+o
ENSG00000069248 NUP133 o+-
ENSG00000030066 NUP160 NonAssociatedWithProgression
ENSG00000075188 NUP37 NonAssociatedWithProgression
ENSG00000125450 NUP85 o--b
ENSG00000110713 NUP98 o--a
ENSG00000085840 ORC1 o+o
ENSG00000115942 ORC2 o++b
ENSG00000135336 ORC3 o+o
ENSG00000115947 ORC4 o+-
ENSG00000164815 ORC5 o+o
ENSG00000091651 ORC6 o--a
ENSG00000007168 PAFAH1B1 o+-
ENSG00000166851 PLK1 o--a
ENSG00000160783 PMF1 o-o
ENSG00000101868 POLA1 NonAssociatedWithProgression
ENSG00000014138 POLA2 o++b
ENSG00000177084 POLE o--b
ENSG00000100479 POLE2 -o-
ENSG00000186298 PPP1CC o--b
ENSG00000113575 PPP2CA o--b
ENSG00000104695 PPP2CB +o+
ENSG00000105568 PPP2R1A o--b
ENSG00000137713 PPP2R1B o-+
ENSG00000066027 PPP2R5A o--b
ENSG00000068971 PPP2R5B NonAssociatedWithProgression
ENSG00000078304 PPP2R5C NonAssociatedWithProgression
ENSG00000112640 PPP2R5D o--a
ENSG00000154001 PPP2R5E o-o
ENSG00000198056 PRIM1 ---
ENSG00000146143 PRIM2 o-+
ENSG00000129084 PSMA1 o--a
ENSG00000106588 PSMA2 o+o
ENSG00000100567 PSMA3 o+o
ENSG00000041357 PSMA4 -+o
ENSG00000143106 PSMA5 o--a
ENSG00000100902 PSMA6 NonAssociatedWithProgression
ENSG00000101182 PSMA7 -+o
ENSG00000008018 PSMB1 o-o
ENSG00000126067 PSMB2 oo-
ENSG00000108294 PSMB3 -+o
ENSG00000159377 PSMB4 NonAssociatedWithProgression
ENSG00000100804 PSMB5 o--b
ENSG00000142507 PSMB6 o-o
ENSG00000136930 PSMB7 NonAssociatedWithProgression
ENSG00000204264 PSMB8 o--b
ENSG00000240065 PSMB9 o-o
ENSG00000100764 PSMC1 NonAssociatedWithProgression
ENSG00000161057 PSMC2 o+o
ENSG00000165916 PSMC3 o-o
ENSG00000013275 PSMC4 NonAssociatedWithProgression
ENSG00000087191 PSMC5 -+o
ENSG00000100519 PSMC6 o+o
ENSG00000173692 PSMD1 NonAssociatedWithProgression
ENSG00000101843 PSMD10 o+o
ENSG00000108671 PSMD11 NonAssociatedWithProgression
ENSG00000197170 PSMD12 oo-
ENSG00000185627 PSMD13 o--b
ENSG00000115233 PSMD14 o+o
ENSG00000175166 PSMD2 ---
ENSG00000108344 PSMD3 ---
ENSG00000159352 PSMD4 NonAssociatedWithProgression
ENSG00000095261 PSMD5 o++b
ENSG00000163636 PSMD6 o+o
ENSG00000099341 PSMD8 o--b
ENSG00000110801 PSMD9 o--b
ENSG00000100911 PSME2 NonAssociatedWithProgression
ENSG00000131467 PSME3 o-o
ENSG00000068878 PSME4 o--b
ENSG00000125818 PSMF1 o-+
ENSG00000164754 RAD21 o--b
ENSG00000153201 RANBP2 o+o
ENSG00000100401 RANGAP1 o-o
ENSG00000179051 RCC2 o--b
ENSG00000117748 RPA2 oo-
ENSG00000106399 RPA3 o++b
ENSG00000177954 RPS27 o-o
ENSG00000143947 RPS27A o+o
ENSG00000157020 SEC13 --o
ENSG00000085415 SEH1L o-o
ENSG00000129810 SGOL1 NonAssociatedWithProgression
ENSG00000163535 SGOL2 NonAssociatedWithProgression
ENSG00000154839 SKA1 o-o
ENSG00000182628 SKA2 +-o
ENSG00000072501 SMC1A o--a
ENSG00000108055 SMC3 NonAssociatedWithProgression
ENSG00000161888 SPC24 o--a
ENSG00000118007 STAG1 NonAssociatedWithProgression
ENSG00000101972 STAG2 o--b
ENSG00000221983 UBA52 o--a
ENSG00000170315 UBB ---
ENSG00000082898 XPO1 o-o
ENSG00000086827 ZW10 NonAssociatedWithProgression
ENSG00000174442 ZWILCH NonAssociatedWithProgression
ENSG00000122952 ZWINT o-o