PEACHi
GeneSet Metabolism of carbohydrates (Pathways_-_Reactome.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -2.6 0.03824 73.0 54.0 43.11
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000094914 AAAS o--a
ENSG00000162688 AGL -+o
ENSG00000149925 ALDOA o--b
ENSG00000109107 ALDOC +-o
ENSG00000240038 AMY2B -+o
ENSG00000198668 CALM1 NonAssociatedWithProgression
ENSG00000074800 ENO1 o--b
ENSG00000111674 ENO2 o--a
ENSG00000141349 G6PC3 o--b
ENSG00000160211 G6PD ---
ENSG00000117308 GALE o--a
ENSG00000213930 GALT ---
ENSG00000111640 GAPDH o-o
ENSG00000114480 GBE1 +-o
ENSG00000120053 GOT1 NonAssociatedWithProgression
ENSG00000125166 GOT2 o--a
ENSG00000105220 GPI +-o
ENSG00000163754 GYG1 -oo
ENSG00000104812 GYS1 o--a
ENSG00000156515 HK1 ---
ENSG00000159399 HK2 o--b
ENSG00000138030 KHK ---
ENSG00000014641 MDH1 o+o
ENSG00000146701 MDH2 --o
ENSG00000111581 NUP107 -+o
ENSG00000069248 NUP133 o+-
ENSG00000124789 NUP153 o+-
ENSG00000113569 NUP155 NonAssociatedWithProgression
ENSG00000030066 NUP160 NonAssociatedWithProgression
ENSG00000095319 NUP188 ---
ENSG00000155561 NUP205 -o-
ENSG00000132182 NUP210 o-o
ENSG00000126883 NUP214 NonAssociatedWithProgression
ENSG00000163002 NUP35 oo-
ENSG00000075188 NUP37 NonAssociatedWithProgression
ENSG00000093000 NUP50 NonAssociatedWithProgression
ENSG00000138750 NUP54 o-o
ENSG00000213024 NUP62 o--a
ENSG00000125450 NUP85 o--b
ENSG00000108559 NUP88 NonAssociatedWithProgression
ENSG00000102900 NUP93 o-o
ENSG00000110713 NUP98 o--a
ENSG00000139496 NUPL1 +-o
ENSG00000136243 NUPL2 o+-
ENSG00000173599 PC o--a
ENSG00000123836 PFKFB2 o+-
ENSG00000170525 PFKFB3 o--a
ENSG00000114268 PFKFB4 NonAssociatedWithProgression
ENSG00000141959 PFKL o--b
ENSG00000152556 PFKM --o
ENSG00000067057 PFKP NonAssociatedWithProgression
ENSG00000171314 PGAM1 o--a
ENSG00000142657 PGD NonAssociatedWithProgression
ENSG00000102144 PGK1 NonAssociatedWithProgression
ENSG00000079739 PGM1 --o
ENSG00000169299 PGM2 o-+
ENSG00000067177 PHKA1 o++a
ENSG00000044446 PHKA2 o--a
ENSG00000102893 PHKB ---
ENSG00000156873 PHKG2 o--b
ENSG00000143627 PKLR NonAssociatedWithProgression
ENSG00000067225 PKM2 o--b
ENSG00000196313 POM121 o--b
ENSG00000113575 PPP2CA o--b
ENSG00000104695 PPP2CB +o+
ENSG00000105568 PPP2R1A o--b
ENSG00000137713 PPP2R1B o-+
ENSG00000112640 PPP2R5D o--a
ENSG00000072062 PRKACA ---
ENSG00000142875 PRKACB o--b
ENSG00000147224 PRPS1 o--a
ENSG00000101911 PRPS2 ---
ENSG00000100994 PYGB ---
ENSG00000101146 RAE1 -o-
ENSG00000153201 RANBP2 o+o
ENSG00000197713 RPE NonAssociatedWithProgression
ENSG00000153574 RPIA o--a
ENSG00000085415 SEH1L o-o
ENSG00000183048 SLC25A10 ---
ENSG00000108528 SLC25A11 ---
ENSG00000115840 SLC25A12 o++a
ENSG00000004864 SLC25A13 NonAssociatedWithProgression
ENSG00000117394 SLC2A1 o--b
ENSG00000059804 SLC2A3 NonAssociatedWithProgression
ENSG00000177156 TALDO1 o--b
ENSG00000163931 TKT o--b
ENSG00000111669 TPI1 o-o
ENSG00000047410 TPR o+-
ENSG00000169764 UGP2 o--a