PEACHi
GeneSet KEGG_SPLICEOSOME (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
DownRegulated -4.5 0.00206 75.0 60.0 44.29
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000100813 ACIN1 ---
ENSG00000198563 BAT1 o--a
ENSG00000116752 BCAS2 o+o
ENSG00000106245 BUD31 -o-
ENSG00000160799 CCDC12 -o-
ENSG00000168438 CDC40 -oo
ENSG00000096401 CDC5L NonAssociatedWithProgression
ENSG00000085872 CHERP o-o
ENSG00000101343 CRNKL1 +o+
ENSG00000132792 CTNNBL1 NonAssociatedWithProgression
ENSG00000150316 CWC15 NonAssociatedWithProgression
ENSG00000174243 DDX23 -o-
ENSG00000198231 DDX42 o--a
ENSG00000145833 DDX46 NonAssociatedWithProgression
ENSG00000108654 DDX5 NonAssociatedWithProgression
ENSG00000109606 DHX15 +-o
ENSG00000204560 DHX16 NonAssociatedWithProgression
ENSG00000140829 DHX38 o--a
ENSG00000067596 DHX8 o--a
ENSG00000108883 EFTUD2 -o-
ENSG00000141543 EIF4A3 NonAssociatedWithProgression
ENSG00000135486 HNRNPA1 o+-
ENSG00000139675 HNRNPA1L2 o+-
ENSG00000170144 HNRNPA3 ---
ENSG00000092199 HNRNPC o-o
ENSG00000165119 HNRNPK ---
ENSG00000099783 HNRNPM o-o
ENSG00000153187 HNRNPU o--b
ENSG00000204389 HSPA1A o--b
ENSG00000204388 HSPA1B o--b
ENSG00000173110 HSPA6 NonAssociatedWithProgression
ENSG00000109971 HSPA8 ---
ENSG00000240682 ISY1 --o
ENSG00000204392 LSM2 --o
ENSG00000130520 LSM4 o--a
ENSG00000106355 LSM5 o++b
ENSG00000164167 LSM6 NonAssociatedWithProgression
ENSG00000130332 LSM7 o--a
ENSG00000162385 MAGOH o--b
ENSG00000128534 NAA38 NonAssociatedWithProgression
ENSG00000136937 NCBP1 o+-
ENSG00000114503 NCBP2 o--b
ENSG00000100138 NHP2L1 NonAssociatedWithProgression
ENSG00000169564 PCBP1 NonAssociatedWithProgression
ENSG00000100410 PHF5A o--b
ENSG00000171566 PLRG1 NonAssociatedWithProgression
ENSG00000084072 PPIE o--a
ENSG00000171960 PPIH o-o
ENSG00000137168 PPIL1 NonAssociatedWithProgression
ENSG00000102103 PQBP1 ---
ENSG00000165630 PRPF18 NonAssociatedWithProgression
ENSG00000110107 PRPF19 o--a
ENSG00000117360 PRPF3 o--a
ENSG00000105618 PRPF31 NonAssociatedWithProgression
ENSG00000134748 PRPF38A o--b
ENSG00000134186 PRPF38B ---
ENSG00000136875 PRPF4 NonAssociatedWithProgression
ENSG00000196504 PRPF40A -o-
ENSG00000101161 PRPF6 o-o
ENSG00000174231 PRPF8 o--b
ENSG00000179950 PUF60 o--b
ENSG00000134453 RBM17 NonAssociatedWithProgression
ENSG00000086589 RBM22 o--b
ENSG00000119707 RBM25 o+-
ENSG00000131795 RBM8A +-o
ENSG00000147274 RBMX oo-
ENSG00000099995 SF3A1 o+-
ENSG00000104897 SF3A2 o--b
ENSG00000183431 SF3A3 NonAssociatedWithProgression
ENSG00000115524 SF3B1 o++b
ENSG00000087365 SF3B2 NonAssociatedWithProgression
ENSG00000189091 SF3B3 NonAssociatedWithProgression
ENSG00000143368 SF3B4 o--b
ENSG00000169976 SF3B5 o--a
ENSG00000164609 SLU7 o--a
ENSG00000119953 SMNDC1 +oo
ENSG00000144028 SNRNP200 NonAssociatedWithProgression
ENSG00000124380 SNRNP27 o++b
ENSG00000060688 SNRNP40 ---
ENSG00000104852 SNRNP70 o--b
ENSG00000077312 SNRPA o--a
ENSG00000131876 SNRPA1 o--b
ENSG00000125835 SNRPB o--a
ENSG00000125870 SNRPB2 NonAssociatedWithProgression
ENSG00000124562 SNRPC o--a
ENSG00000167088 SNRPD1 o--a
ENSG00000125743 SNRPD2 o--a
ENSG00000100028 SNRPD3 o-o
ENSG00000182004 SNRPE NonAssociatedWithProgression
ENSG00000143977 SNRPG o+-
ENSG00000100603 SNW1 NonAssociatedWithProgression
ENSG00000117614 SYF2 NonAssociatedWithProgression
ENSG00000113649 TCERG1 o--a
ENSG00000079134 THOC1 NonAssociatedWithProgression
ENSG00000125676 THOC2 oo-
ENSG00000051596 THOC3 ---
ENSG00000183684 THOC4 -o-
ENSG00000164548 TRA2A NonAssociatedWithProgression
ENSG00000136527 TRA2B oo-
ENSG00000141759 TXNL4A NonAssociatedWithProgression
ENSG00000160201 U2AF1 NonAssociatedWithProgression
ENSG00000063244 U2AF2 ---
ENSG00000168883 USP39 o-o
ENSG00000084463 WBP11 o--b
ENSG00000146007 ZMAT2 o++b