PEACHi
GeneSet KEGG_PROGESTERONE_MEDIATED_OOCYTE_MATURATION (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
oo- -2.9 0.02854 42.0 4.0 0.8
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000138031 ADCY3 o-o
ENSG00000121281 ADCY7 -+o
ENSG00000142208 AKT1 ---
ENSG00000105221 AKT2 o--a
ENSG00000117020 AKT3 o++b
ENSG00000153107 ANAPC1 o--a
ENSG00000164162 ANAPC10 o++b
ENSG00000141552 ANAPC11 NonAssociatedWithProgression
ENSG00000129055 ANAPC13 o++b
ENSG00000176248 ANAPC2 NonAssociatedWithProgression
ENSG00000053900 ANAPC4 NonAssociatedWithProgression
ENSG00000089053 ANAPC5 o++a
ENSG00000196510 ANAPC7 o++b
ENSG00000078061 ARAF o--a
ENSG00000157764 BRAF oo-
ENSG00000169679 BUB1 -o-
ENSG00000145386 CCNA2 o--b
ENSG00000134057 CCNB1 oo-
ENSG00000157456 CCNB2 oo-
ENSG00000130177 CDC16 NonAssociatedWithProgression
ENSG00000094880 CDC23 NonAssociatedWithProgression
ENSG00000164045 CDC25A o--b
ENSG00000101224 CDC25B o--a
ENSG00000158402 CDC25C o-+
ENSG00000176386 CDC26 NonAssociatedWithProgression
ENSG00000004897 CDC27 NonAssociatedWithProgression
ENSG00000170312 CDK1 o-+
ENSG00000123374 CDK2 oo-
ENSG00000114353 GNAI2 --o
ENSG00000065135 GNAI3 NonAssociatedWithProgression
ENSG00000080824 HSP90AA1 NonAssociatedWithProgression
ENSG00000096384 HSP90AB1 o--b
ENSG00000140443 IGF1R o++b
ENSG00000133703 KRAS o+o
ENSG00000164109 MAD2L1 NonAssociatedWithProgression
ENSG00000116670 MAD2L2 o--a
ENSG00000169032 MAP2K1 NonAssociatedWithProgression
ENSG00000100030 MAPK1 NonAssociatedWithProgression
ENSG00000112062 MAPK14 o++b
ENSG00000102882 MAPK3 o--b
ENSG00000107643 MAPK8 o+o
ENSG00000050748 MAPK9 -o-
ENSG00000121879 PIK3CA +-o
ENSG00000051382 PIK3CB -o-
ENSG00000171608 PIK3CD o++a
ENSG00000105851 PIK3CG o++b
ENSG00000145675 PIK3R1 o--a
ENSG00000105647 PIK3R2 o--a
ENSG00000117461 PIK3R3 NonAssociatedWithProgression
ENSG00000127564 PKMYT1 +-o
ENSG00000166851 PLK1 o--a
ENSG00000072062 PRKACA ---
ENSG00000142875 PRKACB o--b
ENSG00000183943 PRKX o--b
ENSG00000132155 RAF1 NonAssociatedWithProgression
ENSG00000117676 RPS6KA1 --o
ENSG00000177189 RPS6KA3 NonAssociatedWithProgression