PEACHi
GeneSet KEGG_HEDGEHOG_SIGNALING_PATHWAY (Pathways_-_KEGGBioCarta.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
AllGenesAssociatedWithProgression -1.7976931348623157E308 0.0 21.0 21.0 15.3
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000125378 BMP4 +-o
ENSG00000166167 BTRC --o
ENSG00000113712 CSNK1A1 o+o
ENSG00000141551 CSNK1D o--a
ENSG00000213923 CSNK1E o--b
ENSG00000169118 CSNK1G1 o--a
ENSG00000133275 CSNK1G2 ---
ENSG00000151292 CSNK1G3 o++b
ENSG00000072803 FBXW11 o++b
ENSG00000180447 GAS1 o++b
ENSG00000106571 GLI3 o++a
ENSG00000082701 GSK3B -o-
ENSG00000072062 PRKACA ---
ENSG00000142875 PRKACB o--b
ENSG00000183943 PRKX o--b
ENSG00000185920 PTCH1 o++b
ENSG00000117425 PTCH2 -+o
ENSG00000112210 RAB23 +o+
ENSG00000107882 SUFU o--b
ENSG00000108379 WNT3 o+o
ENSG00000043355 ZIC2 +-o