PEACHi
GeneSet HIV_human_PPI_GP41 (HIV_Collection.gmt.txt) is enriched in the following clusters
Cluster log(P) Qvalue Observed in Background Observed in Cluster Expected in Cluster
--o -2.4 0.04111 35.0 4.0 1.07
Gene expression pattern
Figure: Temporal expression patterns were grouped into clusters with differential expression profiles at three phases of the viral life cycle, namely reverse transcription, integration, and late phase. Boxplots on the left show the distribution of the normalized regression weights for each viral phase used in clustering. Expression change pattern of each gene over time is plotted for mock and HIV samples (dotted orange lines) along with the cluster median (bold red line).
List of genes
Ensembl ID Name Cluster
ENSG00000184743 ATL3 o+o
ENSG00000185825 BCAP31 ---
ENSG00000136026 CKAP4 NonAssociatedWithProgression
ENSG00000131143 COX4I1 NonAssociatedWithProgression
ENSG00000178741 COX5A o--a
ENSG00000126267 COX6B1 NonAssociatedWithProgression
ENSG00000149218 ENDOD1 oo+
ENSG00000068912 ERLEC1 NonAssociatedWithProgression
ENSG00000137312 FLOT1 --o
ENSG00000090863 GLG1 o-+
ENSG00000127463 KIAA0090 NonAssociatedWithProgression
ENSG00000116685 KIAA2013 o--b
ENSG00000074695 LMAN1 o-o
ENSG00000169223 LMAN2 o--b
ENSG00000169446 MMGT1 o-o
ENSG00000140990 NDUFB10 -o-
ENSG00000151092 NGLY1 o+o
ENSG00000167004 PDIA3 o--a
ENSG00000101856 PGRMC1 o-o
ENSG00000167085 PHB NonAssociatedWithProgression
ENSG00000215021 PHB2 ---
ENSG00000150867 PIP4K2A NonAssociatedWithProgression
ENSG00000188313 PLSCR1 o++b
ENSG00000123131 PRDX4 o--a
ENSG00000130175 PRKCSH o--b
ENSG00000074696 PTPLAD1 o-o
ENSG00000011454 RABGAP1 o--a
ENSG00000157916 RER1 -+o
ENSG00000155366 RHOC --o
ENSG00000008952 SEC62 o--a
ENSG00000129128 SPCS3 ---
ENSG00000165283 STOML2 ---
ENSG00000148248 SURF4 o--b
ENSG00000099800 TIMM13 o--a
ENSG00000126953 TIMM8A NonAssociatedWithProgression
ENSG00000150779 TIMM8B --o
ENSG00000095209 TMEM38B NonAssociatedWithProgression
ENSG00000130204 TOMM40 o--a
ENSG00000239264 TXNDC5 o--b
ENSG00000136731 UGGT1 NonAssociatedWithProgression
ENSG00000101558 VAPA NonAssociatedWithProgression
ENSG00000165280 VCP o+-
ENSG00000213585 VDAC1 --o
ENSG00000165637 VDAC2 -o-
ENSG00000078668 VDAC3 -+o
ENSG00000151532 VTI1A +oo